RadishBase

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Information for unigene UN05088

FASTA Sequence

Unigene ID: UN05088	Length: 407	SSR
GGGAGCTTTAGAGAGAGAGATAGAAGCAGAGAGAGAGAGAGAGTAACAGAGATGGCTAGTGGAATCGCTCGTGGCCGTTTGGCGGA GGAGAGAAAATCGTGGAGGATGAATCATCCTCATGGTTTTGTGGCGAAACCGGAGACTGGGCCTGATGGGTCTGTGAATCTAATGG TGTGGCATTGCACTATCCCTGGTAAAGCCGGGACTGATTGGGAAGGTGGATTCTTTCCATTAATGATGCACTTCAGCGAGGACTAT CCGAGCAAGCCTCCCAAATGCAAATTCCCACCAGGTTTTTTCCACCCTAATGTCTATCCATCAGGGACAGTCTGTCTTTCAATCCT TAACGAGGATTCCGTAAGTACTCTCTTTTCTTTGCATTTCTCCATGACCAAATCATCATCCTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ADP37981 ubiquitin-protein ligase [Brassica napus]	563	2e-056
NP_191346 SUMO-conjugating enzyme SCE1 [Arabidopsis thaliana]	548	1e-054
CAN61018 hypothetical protein VITISV_001138 [Vitis vinifera]	547	1e-054
XP_002284949 PREDICTED: hypothetical protein [Vitis vinifera]	547	1e-054
BAJ53199 JHL03K20.8 [Jatropha curcas]	533	5e-053

Swiss-Prot top hits (Blast detail)	Score	e value
Q9NGP4 Sumo-conjugating enzyme ubc9	416	7e-041
Q9DDJ0 SUMO-conjugating enzyme UBC9-B	397	1e-038
P63283 SUMO-conjugating enzyme UBC9	397	1e-038
P63279 SUMO-conjugating enzyme UBC9	397	1e-038
O09181 SUMO-conjugating enzyme UBC9	397	1e-038

TrEMBL top hits (Blast detail)	Score	e value
Q42551 Ubiquitin carrier protein	548	7e-055
A5B6X4 Ubiquitin carrier protein	547	9e-055
B9T817 Ubiquitin carrier protein	531	6e-053
B3TLZ3 Ubiquitin carrier protein	529	1e-052
B7FGV0 Ubiquitin carrier protein	529	1e-052

Arabidopsis top hits (Blast detail)	Score	e value
AT3G57870.1 SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligase	548	6e-057
AT1G14400.1 UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin-protein ligase	200	1e-016
AT1G14400.2 UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin-protein ligase	200	1e-016
AT2G02760.1 ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2); ubiquitin-protein ligase	200	1e-016
AT5G62540.1 UBC3 (ubiquitin-conjugating enzyme 3); ubiquitin-protein ligase	191	1e-015

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	1			50%


11	1			50%

Unigene Members	Member information