RadishBase

| | | |

Information for unigene UN05101

FASTA Sequence

Unigene ID: UN05101	Length: 1691	SSR
GGAACCAAACTCTGCTTTAGAACAGATCAGAGAGAGAGAGAGTTAGCGAGAGAAGCCATGGATGAGACTGTGGATCAGAGCTTGAG AGAGATGCGAGAGACGTTTGCGAGCGGGAGGACGAGGAGTGTAAAGTGGAGGAAGACACAACTCGAAGCTATAATCGAGATGGTTA AAGACAATGAAGACAAGATGTGTGATGTTCTGTTTCAAGATTTGGGTAAACATAGTACTGAAGCATTCAGAGATGAGCTTGGCTTT GTCATGAGATCTGCTACTACTGCTTTAAACTGTCTTGATAAATGGGTCGTTCCCAAAAAGAGCAACCTTCCTCTGTTGTTCTATCC ATCAACTGGGAAAGTGATCTCAGAGCCGTATGGGGCGGTTCTTGTTCTGTCTAGCTGGAACTTTCCTATATCTTTGTCTTTGGACC CAATGATTGGGGCAATATCAGCAGGAAATACCGTGTTGCTCAAGGCATCTGAATTAAGCCCTAATGCATCTGCCTTCTTCGCCAAG ACAATCCCGTCTTATCTCGACAGTAAAGCGATCAAGGTTATCGAAGGAGGTCCTGATGTCGCTACTATCCTCTTGAAGCATCAATG GGACAAGATCTTCTTCACTGGGAGTCCAAGGATTGGAAAAATCATAATGGCTGCAGCTGCAGAGCATTTGACTCCAGTGACATTAG AGCTTGGTGGAAAATGTCCCACCATTGTTGATCACCACTCTGTTTCAAAGGACATGAAGTCTGTTGTGAAGAGAATCTCTGGAGGG AAGTGGGGTTCTTGCAGTGGACAAGCTTGTATCTCCGTAGATTACGTTCTTGTAGAACAGAGTTTTGCGTCTTCTCTGATTGAAAT GTTGAAGCCGATGTTAAGGTCTTTCTTTGGGGAAAACCCTAAAGAATCTGGATGTCTCTCTAGGATTGTTACCAAGAAACACTTTC AGAGATTGGCTCGTCTTCTTAATGATCCTGGTGTTCAAGCTTCAATCGTTTATGGCGGCTCCATGGATGAAGAGAAGCTGTATATT GAGCCAACGATCTTGTTGGATCCTCCTCTTGATTCTGAGATAATGAATGAAGAAATATTTGGCCCAATTCTCCCTATTATCACATT ACGTGACATCCAAGAAAGCATAGGGTTCATCAAGTCAAAACCAAAACCACTTGCCATCTATGCATTCACCAAAGACGAGAACCTTA AAACTAGAATCTTGTCAGAAACATCTTCCGGAAGTGTTACTTTCAACGATGTCATGATCCAGTACATGTGTGATGCGTTGCCCTTT GGAGGAGTGGGAGAGAGTGGAATAGGAAGGTATCACGGGAAATACTCATTCGAATGTTTCAGTCACGAGAAGGCAATAATGGAAGG AAGCTTAGCAGCGGATCTTGAAGCTCGATACCCTCCATGGAACAGCTTCAAGCTCACCTTTTTTAGACTCGCCTTTCGTGAAGCTT ACTTCAAGCTTGTTCTCTTTATGCTTGGTCTTACAAAATAAGGCCAGAGAGTACTGAGGAAGAGACACACACGCACGCACAGAATA TACACATATATATGAGATTGATCCATATCACTTTATGTTTGATTTTTGTGTCTTCACCTAATAAGTTTGATTCAACTGTCATTCAA GCTTTGATTTTCATATCTTCACCTAATAAGTTTGAATGAACTGTCAGTCAAGCTCGG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002869039 ALDH3F1 [Arabidopsis lyrata subsp. lyrata]	2223	9e-248
NP_195348 aldehyde dehydrogenase 3F1 [Arabidopsis thaliana]	2204	1e-245
CAE48163 putative aldehyde dehydrogenase [Arabidopsis thaliana]	2173	5e-242
XP_002273358 PREDICTED: hypothetical protein [Vitis vinifera]	1644	1e-180
CBI17422 unnamed protein product [Vitis vinifera]	1644	1e-180

Swiss-Prot top hits (Blast detail)	Score	e value
Q70E96 Aldehyde dehydrogenase family 3 member F1	2204	6e-247
Q70DU8 Aldehyde dehydrogenase family 3 member H1	1166	1e-126
Q8W033 Aldehyde dehydrogenase family 3 member I1, chloroplastic	1150	1e-124
Q8VXQ2 Aldehyde dehydrogenase	1114	1e-120
P51648 Fatty aldehyde dehydrogenase	935	8e-100

TrEMBL top hits (Blast detail)	Score	e value
A4FVT2 At4g36250	2204	1e-245
B9HFC3 Predicted protein	1632	2e-179
B9GF13 Predicted protein	1440	4e-157
C4JBD6 Putative uncharacterized protein	1426	2e-155
B6TXC0 Aldehyde dehydrogenase 3B1	1422	5e-155

Arabidopsis top hits (Blast detail)	Score	e value
AT4G36250.1 ALDH3F1 (Aldehyde Dehydrogenase 3F1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)	2205	4e-248
AT1G44170.1 ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)	1166	1e-127
AT1G44170.2 ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)	1166	1e-127
AT4G34240.1 ALDH3I1 (ALDEHYDE DEHYDROGENASE 3\|1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)	1150	8e-126
AT1G44170.3 ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)	1082	6e-118

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	3			50%


10	2			33%


6	1			17%

Unigene Members	Member information