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Information for unigene UN05110
| FASTA Sequence |
| Unigene ID: UN05110 | Length: 647 |
SSR | | GGACTCGACAGTCAACTAGGGTTTACCGGAAACCTCAGAGAGACACGACGACGCTCTCTCTCTCTCTCTCTCTCTACTCTGGCTGC
TTACTGATCCGAAGGTGAAATGGCGCTGCGACATCTGAGCCGGCCGAGAGACATCGTAAAGAGATCGACGAAGAAGTACCTCGACG
AACCCCTTTACCATCGTCTCTTCAAGGACGGCGGATCCGAGGTCAATGTTCGTCAGCAGCTCAATCAGTTCCTCAAGGGCACTAAA
CACGTCTTCAAATGGGAAGTCGGAGACACGATCAAGAAGCTCCGTAGCCGCGGCCTCTATTACCCCGCTCTCAAGCTCTCTGAAGT
AATGGAACATAGAGGTATGAACAAGACGGTGAGTGACCAAGCAATCCATCTCGATCTCGTTGCCAAAGCTCGTGGAATCACAGCGG
GAGAGGCTTACTTTGTCGCTCTTCCGGAGACATCTAAGACCGAGCTCACCTACGCCTCTCTTCTGAACTGCTACTGCAAGGAGCTG
GTGACAGAGAAAGCGGAAGGTTTATTGAGCAAGATGAAAGAGCTCAACATCACTGTTAGCTCCATGTCCTACAACAGCCTCATGAC
TCTTTACACAAAGACGGGACGGGCCGAGAGGGTTCCGGGGGTGAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002886593 pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | 830 | 6e-087 |
| NP_176276 pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | 814 | 4e-085 |
| XP_002527905 pentatricopeptide repeat-containing protein, putative [Ricinus communis] | 662 | 2e-067 |
| XP_002331159 predicted protein [Populus trichocarpa] | 656 | 9e-067 |
| XP_002267979 PREDICTED: hypothetical protein [Vitis vinifera] | 630 | 9e-064 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O22714 Pentatricopeptide repeat-containing protein At1g60770 | 814 | 2e-086 |
| Q93WC5 Pentatricopeptide repeat-containing protein At4g01990, mitochondrial | 233 | 5e-019 |
| Q84JR3 Pentatricopeptide repeat-containing protein At4g21705, mitochondrial | 231 | 9e-019 |
| Q9FZ24 Pentatricopeptide repeat-containing protein At1g02370, mitochondrial | 228 | 2e-018 |
| Q8LPS6 Pentatricopeptide repeat-containing protein At1g02150 | 225 | 4e-018 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SPI6 Pentatricopeptide repeat-containing protein, putative | 662 | 1e-067 |
| A9PHB6 Predicted protein | 656 | 6e-067 |
| A2XFN0 Putative uncharacterized protein | 566 | 2e-056 |
| Q01M49 H0107B07.5 protein | 566 | 2e-056 |
| Q7XTG6 OSJNBa0041M06.2 protein | 566 | 2e-056 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G60770.1 pentatricopeptide (PPR) repeat-containing protein | 814 | 2e-087 |
| AT4G01990.1 pentatricopeptide (PPR) repeat-containing protein | 233 | 5e-020 |
| AT4G21705.1 pentatricopeptide (PPR) repeat-containing protein | 231 | 8e-020 |
| AT1G02370.1 pentatricopeptide (PPR) repeat-containing protein | 228 | 2e-019 |
| AT1G02150.1 pentatricopeptide (PPR) repeat-containing protein | 225 | 4e-019 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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