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Information for unigene UN05129
| FASTA Sequence |
| Unigene ID: UN05129 | Length: 816 |
SSR | | GTAGAACATGATTGGCTATTTTATAAATGGAAGCTTAAAATCTTATTATAGCCGTTCATGTTCTACACTTCTAAAGCAAGGAAAAG
AAATAAAGAAAACAGAAGCACACAAAGCATTATTAAGAGTCAAATCTCTTCACACTCCTTTAGTATCAGTGCTGAGCAAAAGAAAC
TGTCCTAGAGAGAGAGAGAGAGAGAGAGGTCAACTGCGTCTGTTTCATGACAAAGTAGACAAACAACAAACAGTGGAGCTAAAAAC
ACTCTCGCCAGCTAGTAGCTGAACCCGACTTGTTGCTGCTGTGGTGGCTGCTGAGGTGGTTGCTGCCCCACCTGTGGTGGCTGCTG
ATACCCGCCAGGGTAGCCTCCGTAATATGCGTTAGGGTCTTGCGGCATGGAGTATCCATAATGCTCCTGACCTTGTCCATACCCAC
CGTAATAATACTGACTCGGATCCGCCGCCTGTTTAGATGAAGGACTTCGTCCCCATGATAGCCTGACGGTTGTTCCACCCAACTGC
GTTCCATTCAACGTTCTAATTGCTTCCTCTGCACAGCTTTTCTCAGAAAACTGAACGAATCCACAGCGCTTTCCGGCAGGTATTTT
CACATGCACAATCTCGCCATACTGGCTAAAGACATTCTTTAGATGATCATCTGTCACAGTGGGATCTAATCCACCAACAAAAACGG
TTGTGTTATTGGGATCATTATCAGTTGGAACCCCTGAAGCAGCACTCTGGTATGAATCTTTTTTGCTAGCAGCTGGCCCAATCCTC
ATAGGCCTTGTCGAACAAGGAACACCGTTCATCTCAGTCATT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002889883 ATRBP45B [Arabidopsis lyrata subsp. lyrata] | 851 | 4e-089 |
| NP_172630 RNA recognition motif-containing protein [Arabidopsis thaliana] | 842 | 4e-088 |
| AAM64532 putative DNA binding protein [Arabidopsis thaliana] | 842 | 4e-088 |
| CAN83958 hypothetical protein VITISV_039907 [Vitis vinifera] | 549 | 4e-054 |
| XP_002522953 nuclear acid binding protein, putative [Ricinus communis] | 547 | 6e-054 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O60176 Uncharacterized RNA-binding protein C23E6.01c | 249 | 1e-020 |
| Q00539 Protein NAM8 | 231 | 1e-018 |
| P32831 Negative growth regulatory protein NGR1 | 227 | 4e-018 |
| O13759 RNA-binding post-transcriptional regulator csx1 | 222 | 1e-017 |
| Q5ZM16 Pre-mRNA-splicing factor RBM22 | 155 | 8e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LBV8 Putative DNA binding protein | 842 | 3e-088 |
| Q9SAB3 At1g11650 | 842 | 3e-088 |
| A5C5B3 Putative uncharacterized protein | 549 | 3e-054 |
| B9SAD4 Nuclear acid binding protein, putative | 547 | 4e-054 |
| B4FVM1 Putative uncharacterized protein | 532 | 2e-052 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G11650.2 RNA-binding protein 45 (RBP45), putative | 875 | 2e-094 |
| AT4G27000.1 ATRBP45C; RNA binding | 528 | 4e-054 |
| AT5G54900.1 ATRBP45A (RNA-binding protein 45A); RNA binding | 495 | 3e-050 |
| AT1G11650.1 RNA-binding protein 45 (RBP45), putative | 421 | 1e-041 |
| AT1G47500.1 ATRBP47C' (RNA-binding protein 47C'); RNA binding | 402 | 2e-039 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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