RadishBase

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Information for unigene UN05133

FASTA Sequence

Unigene ID: UN05133	Length: 1039	SSR	SNP
AAACTGTTTGGTCGTTGTATTGTGGAAAGATGAGCAAACAACTCTTAGAAGTCAATATACTAAATTAAAGAGCAAAAGAAATATAA ACAATTCAGTCATTGTCGAAAAAAATAAGCAACATAAAAAGAGAAGAATACAAGTTTCGATTAAAACCTTCGTACAAATAGGAAAG GGCATTTTAGAGCGAATCAGAAATGTTGGAATAAAACAAGGCACCAGCTGCCTGGTCTGTCTGTCTCGTCTTAAAACTTCAATTTT ACAACTTTCTTTTAAGTTCCACAGCATGCAGACTTCTGTGTGGCCTGCCCGGCACCAGCTGCCTGGTCTGTCTGGCTTATCTTAAT CGTCGCAGGCTCAGCCCTGGAGTCAGTGTCAGAAAGCCTCTGCTTGATGTCCCTCCCTATCGAGAAGAAAACTTCTTCCACGTTTA GGTTTGTCTTAGCACTTGTTTCGAAGAACTTAATTCCGTACTCATCAGCAAGAGCCTGACCCTTTGCTGTAGGTACAGCCCTCTTG CTTTCATCCATGTCAGCCTTGTTACCAACCAAGATCTTGTTAACATTATCAGAAGCATGTTGTTCGATATTACGAATCCAGTTCCT AATGTTGTTGAAGGAAGACTCGTCTGTGACATCATAGACAAGCAAAATCCCCATTGCCCCACGGTAATAAGCAGTGGTGATAGTGC GGAAGCGTTCTTGACCAGCAGTGTCCCAAATCTGGAGCTTGATACGTTTCCCATCAAGCTCAATCGTTCTGATCTTAAAGTCAATG CCAATGGTGGTGATGAAGCTAGTGGTGAAGGATCCATCAGAGAAACGTAGAAGTAGGCAACTTTTACCCACACCACTGTCTCCAAT CAGAAGAAGCTTAATGAGATAATCATAATCGGCTCTAGCCCTAGCAGGTGGAGCAGCCATCGATTCGATTCGATTCGATTCGATTC CGACGATGATGAAAGGGAAGAGAAGGAACCGAGATGTAGTCGGAGAGACAGCGACGGTTATGCGGACGGCTAAAATGCGCCACTCC TCGATTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_190192 Ras-related protein ARA-3 [Arabidopsis thaliana]	1099	1e-117
BAJ34629 unnamed protein product [Thellungiella halophila]	1089	1e-116
NP_200792 Ras-related protein Rab-8A [Arabidopsis thaliana]	1074	8e-115
XP_002866353 hypothetical protein ARALYDRAFT_496120 [Arabidopsis lyrata subsp. lyrata]	1069	3e-114
AEA92304 Rab2 [Hevea brasiliensis]	1056	9e-113

Swiss-Prot top hits (Blast detail)	Score	e value
P28186 Ras-related protein ARA-3	1099	4e-119
Q39433 Ras-related protein RAB1BV	976	8e-105
P20790 Ras-related protein Rab-8A	739	2e-077
P20791 Ras-related protein Rab-8B	733	1e-076
P36861 GTP-binding protein yptV2	701	6e-073

TrEMBL top hits (Blast detail)	Score	e value
Q9FJF1 Putative GTP-binding protein ara-3	1074	5e-115
B9GER9 Predicted protein	1046	9e-112
A5C254 Putative uncharacterized protein	1045	1e-111
A9P9D8 Predicted protein	1045	1e-111
B9T4D9 Putative uncharacterized protein	1044	2e-111

Arabidopsis top hits (Blast detail)	Score	e value
AT3G46060.1 ATRAB8A; GTP binding	1100	3e-120
AT3G46060.2 ATRAB8A; GTP binding	1100	3e-120
AT3G46060.3 ATRAB8A; GTP binding	1100	3e-120
AT5G59840.1 Ras-related GTP-binding family protein	1075	2e-117
AT3G53610.1 ATRAB8; GTP binding	1042	2e-113

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	2			17%


11	3			25%


10	6			50%


18	1			8%

Unigene Members	Member information