RadishBase

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Information for unigene UN05163

FASTA Sequence

Unigene ID: UN05163	Length: 812	SSR
GATAACATGTAGAATTTATGTATATGTGTGTCTCTCCCAAGAGGGTCAAATCAAATTGATCAAAAGCTTTGAGAACAAGCGAAGAA ATAGAGTTAGCTGAGTAAAGAAATCAGAGAGATGAATACTCCTCATAAATCATGAATCGATGGAGGTTTTTTATTTTCACATGGTA CCAGCTCTTCCGGATGTCGGTTTTGTACTAGGCTTGAATTTGGAGATGTCAACGAGATCCCCAAATAGCTTATCCTCTGGTTTATT CTTCGGTTTCATAGGAGGAAGATAAGACGATGATGGTGGTACCTGATGCGACGCCTGGTCTCTGATGGACATGCCATGCATTTGCT GCTCCAGATATGGGCTGCTTCCTTGTTGCTGTTGATTATATCCATATCCGTATCCTCCCATCTGGTTTCCATACGCCTGTTGCTGT TGCTGTTGCTGTTGCTGTTGGGCATAGAACTGAGCCATCATCATCTGCTGTTGCTGCTGCTGCTGTTGGGGTGGATAGCCTGGTCC TAGAGCTTGATTGGCTTGGTTTGGCATTGGCATTGACTGTTGCATATACATACCGCTACCGGTCGGCATCTGAGGGTATGGATTGT TAACAGGTTGGCTGGTTTGGGGCATCTGAGGATATTGTTGAGCATGTGCGAAGGCAAATTGTGTCTGATGCATTTGAGGAGAAAAC GGACTTCCTGACTCTGCAGTGGGACTGAAGTCTTGATGTTGAGCTTCCCATGGGGGGAGGTGGAAATGCCATATTGTCTTGGGCAC CTTCATAAGATGGCTGCTGTGGTTGTTGCAACTGCTGT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_195002 ENTH/VHS/GAT family protein [Arabidopsis thaliana]	751	1e-077
CAA18585 putative protein [Arabidopsis thaliana]	751	1e-077
NP_001190892 ENTH/VHS/GAT family protein [Arabidopsis thaliana]	751	1e-077
XP_002869247 protein transporter [Arabidopsis lyrata subsp. lyrata]	749	2e-077
ABN48560 protein transporter [Brassica juncea]	464	3e-044

Swiss-Prot top hits (Blast detail)	Score	e value
Q54DK4 Alpha-protein kinase 1	157	5e-010
P07207 Neurogenic locus Notch protein	145	1e-008
Q5XIY8 PAX-interacting protein 1	145	1e-008
Q54R73 Uncharacterized protein DDB_G0283357	145	1e-008
Q86AF2 Putative uncharacterized protein DDB_G0271606	145	1e-008

TrEMBL top hits (Blast detail)	Score	e value
O65525 Putative uncharacterized protein AT4g32760	751	1e-077
Q8L860 Putative uncharacterized protein At4g32760	751	1e-077
A3F4J7 Protein transporter (Fragment)	464	2e-044
Q54YK3 Putative uncharacterized protein	165	9e-010
A0NFH8 AGAP004734-PA	164	1e-009

Arabidopsis top hits (Blast detail)	Score	e value
AT4G32760.1 protein transporter	752	5e-080
AT1G25540.1 PFT1 (PHYTOCHROME AND FLOWERING TIME 1); transcription coactivator	134	2e-008
AT1G25540.2 PFT1 (PHYTOCHROME AND FLOWERING TIME 1); transcription coactivator	134	2e-008
AT3G05220.1 heavy-metal-associated domain-containing protein	118	1e-006
AT3G05220.2 heavy-metal-associated domain-containing protein	118	1e-006

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	1			50%


10	1			50%

Unigene Members	Member information