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Information for unigene UN05178

FASTA Sequence
Unigene ID: UN05178Length: 1860 SSR 
CAGTAATTTATGATTTTTTCCATATTGCTATAGTTGGGGAAATCATCAACAAGAAAAAGATTGTTCTGTTATAACAAAAAGATTGT
GACATGGTGAATTGATGACTGCGTGGAGATGTTCGTCTTATCCATTTCCTTTCCAAAAAGAAAAAATATTAAACAAATAAAAAGTA
GAGAAAAATCAAATAAAATATATTCACCAAAATCTCAACTTCTAGAGAGAGAGAGAAACAGAGAGAGAAGGGTCTGCTTTGGCGGT
TGGAAGCAGAAGTAGCTATCAGAACATTGCTTCATAAATAAAATCTCAGGTGTTAGATTAGGCCAACGGTTCTCTTCTCCCTTTCT
TCAGTTCTCTTCAAACCAAAGCATAGAAACGAAACCAAAGCAAAATATATAAACAATCCTATTTTTGTTGTTACGGTTTGATTCTT
GGTAGCCATCCCTCGCCCAACTTCACCTTCTCTGACATAATCACAAAACCTTCTTCTCTCGTTTCTTCCATCTGTCCCTATATAAT
CAGTTAATCACATATCGTGGAGTTCGTGTACGGAACTGAGTTTGCCTTTTTGTACGTGGTTGCAGATAAAAGGTCTAACTCCAAAT
GGATACTGTTCAGTCTGAGTCACCTTCCAATAAAATCTCCATCACTATTTCATCGTCTTCTTCGTTATGTACCACACCACCACGCA
GTGAAAACAGTCATGTGGCTACTACCTCTGTTGTTCAAGAGAGGCTTCCAACTTCCTTCTACTTAAGATTAGCTATGAAGGTTTCT
AGAGCTAGATGGTTCATCTTCTTGAGAAGAGTCTTTCACTACCAGAACGGATCAAGATCAGACCTCGGGTCTAATCCTTTCAACTC
CAGCACGTGGATGATGTCTGAGCTCCTAGCTCTGTTTATTCAGCTTACTGTCATAACATTCACACTAGCTATCTCCAAAGATGAGA
GACCTATCTGGCCGGTGAGGTTGTGGATCACAGGCTATGATGTGGGATGTCTCCTCAGTCTCATGCTCTTGTATGGTCGGTTTCGC
CAGCTAGACCAAGATAATAGTTTTGTCCATGGAGATATCGAGCAGCAAGAGAGAAGCAGAGAAGACAACAGGAGCTCTCGTTTGAT
GAATAGATGCAGAACGTCTCTAGAGCTTTTCTTTGCGATTTGGTTTGTGATTGGGAATGTTTGGGTGTTCGATTCTAGGTTCGGTT
CTTTCAACCATGCTCCAAGGCTTCACATCCTCTGCGTCTCTCTTCTAGCTTGGAACGCTCTCTGCTACTCGTTTCCTTTTCTTCTC
TTCATGTTCCTATGTTGCATTGTGCCTCTCGTTAGTAGCCTACTTGGATACAACATGAACATGGGATCTTCAGACAGAGGAGCATC
AGATGACGAAATATCTAGTCTCCCTAGCTGGAAATACAAACGAATCGATGACAATGCTTCATCTCCTACAACTGATGATCCACAGT
GTTGTATATGTTTGGCAAAGTATAAAGACAAGGAAGAAGTAAGAGAGCTACCATGTTCACATAAGTTTCATCTAAAGTGTGTAGAT
CAATGGCTTCGTATCATATCTTGTTGTCCTCTCTGCAAACAAGATCTTTCCAGATGATAGAAGGCAAAAACCCTAAAGCAGACAAG
AGCTCATAAGAGTCAATGTCTGTGATTTAAGTTATATAGTTTTTTTTTTGGTTTGGTTTTTCTTTTAAAGGTTTTTAGTTTTTGTT
TTGTTTTGATTTGATTTGAAGCAAATAGGTTACTTGTGTGAGTGTCAAATTTTTGTACAGAAAGAGCTCACCAGTAACCGTAAAAT
ACATTGTGAGGAGAGATATAAATCACAATGCCACAAATATTATAGAATCTGAGT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002864420 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]14764e-161
NP_568834 RING/U-box domain-containing protein [Arabidopsis thaliana]14658e-160
CAB43854 putative protein [Arabidopsis thaliana]12982e-140
NP_194388 RING/U-box domain-containing protein [Arabidopsis thaliana]12982e-140
XP_002867557 protein binding protein [Arabidopsis lyrata subsp. lyrata]12793e-138

Swiss-Prot top hits (Blast detail)Scoree value
Q8LDB8 E3 ubiquitin-protein ligase At1g631701822e-012
Q93Z92 E3 ubiquitin-protein ligase At4g116801822e-012
Q9LN71 E3 ubiquitin-protein ligase At1g127601812e-012
Q9H0F5 RING finger protein 381705e-011
Q8BI21 RING finger protein 381705e-011

TrEMBL top hits (Blast detail)Scoree value
Q8LES9 Putative uncharacterized protein14655e-160
Q0WSW1 Putative uncharacterized protein At4g2658012981e-140
Q9SUA5 Putative uncharacterized protein AT4g2658012981e-140
Q9FKU7 Similarity to unknown protein12022e-129
C6T8T5 Putative uncharacterized protein (Fragment)9352e-098

Arabidopsis top hits (Blast detail)Scoree value
AT5G55970.1 zinc finger (C3HC4-type RING finger) family protein14662e-162
AT5G55970.2 zinc finger (C3HC4-type RING finger) family protein14662e-162
AT4G26580.1 protein binding / zinc ion binding12986e-143
AT4G32600.1 zinc finger (C3HC4-type RING finger) family protein2011e-015
AT1G80400.1 zinc finger (C3HC4-type RING finger) family protein1947e-015

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
92  29%
 
213  43%
 
81  14%
 
181  14%

Unigene MembersMember information