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Information for unigene UN05242

FASTA Sequence
Unigene ID: UN05242Length: 955 SSR 
GGAAAGGAAAAGCGTCCGTCCCCTTCGCTTTCTACTATTCTCTATACATGGCGTAATTGTGCAGAGAGATCCAATCAAACTTAACA
GTTCTGCTGTCACAACTCGAGAGACCAAGAAGCAATAGATCTAACACAGCAACTAGTAATTTAGAGCTAAGAATTCAGGGAGAGAG
AGAGAGAGAGGATGGATAAGATGAATCAGGCTTTCGAGAAGATGAAGATGTTGGTGGGTATGGAGGTTGAAGACGAGGAACGAGCT
GCCGAAGAAGAAAGCTCTCTCTCATTCATGGAAGATCTTAATCGCAATTGCGCTTTGACTACCAAACAGAGATTCTATGGATTTGC
GATTTGCTTGTCAGCTGGCTTGGCATGTACTCTTTTGTCAATGCTTGTTTTCTTCAATCCGATCAAGTTTGGTTTCACATTCACTC
TTGGAAATTTGATGGCACTTGGGAGCACAGCATTCCTTATAGGCCCACAGAGGCAGGTCTCGATGATGCTTGACCCAGCTCGCATC
TACGCTACTGCTTTGTATCTTGCCAGCATTATCATTGCCTTGTTTTGCGCTCTCTATGTTCGTAACAAGCTGCTGACGCTACTTGC
TATCATTCTTGAGTTCTCTGGTCTAATATGGTATAGCTTGAGCTACATCCCTTTTGCAAGGACCATGGTCTCAAAGGTGTTCATGA
CTTGTTTCGACACCGAGTTTTGAGCACAGCTCCTATACCCATCAAGGATTTGTCGTCCCAAAACCAGTGTGCTCTGTTCTAATGAT
CGGTCTGTGTTCAAAGCTGGACTTGTTTGATGCACGAAGAATGCTGAAAGCTCTGATAGTCTTTGGTTTCTATTTTGCTTCTTAAC
ATGAACTTCATGTCTTCACAACTCGTAGCACGGTTTATTGTATATTTTGCTGTGGAATATAACGTAAATTTTGTGCGGGTCCTTCC
TTTTTCCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002874136 hypothetical protein ARALYDRAFT_489217 [Arabidopsis lyrata subsp. lyrata]8533e-089
NP_197746 Got1/Sft2-like vescicle transport protein [Arabidopsis thaliana]8506e-089
XP_002305352 predicted protein [Populus trichocarpa]7342e-075
XP_002270756 PREDICTED: hypothetical protein [Vitis vinifera]7233e-074
XP_002518017 Vesicle transport protein SFT2B, putative [Ricinus communis]7216e-074

Swiss-Prot top hits (Blast detail)Scoree value
Q4FZV2 Vesicle transport protein SFT2B2652e-022
Q8VD57 Vesicle transport protein SFT2B2642e-022
O95562 Vesicle transport protein SFT2B2544e-021
Q5U3Y5 Vesicle transport protein SFT2A2302e-018
Q5SSN7 Vesicle transport protein SFT2A2266e-018

TrEMBL top hits (Blast detail)Scoree value
Q9LT07 Putative uncharacterized protein At5g235508504e-089
B9H430 Predicted protein7341e-075
B9RW98 Vesicle transport protein SFT2B, putative7214e-074
C6T0X3 Putative uncharacterized protein (Fragment)6848e-070
C5XV04 Putative uncharacterized protein Sb04g0233006515e-066

Arabidopsis top hits (Blast detail)Scoree value
AT5G23550.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24170.1); Has 455 Blast hits to 455 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 96; Plants - 62; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).8512e-091
AT5G24170.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23550.1); Has 462 Blast hits to 462 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 206; Fungi - 92; Plants - 65; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).4202e-041
AT4G26550.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56020.1); Has 452 Blast hits to 452 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 89; Plants - 61; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).1324e-008
AT5G56020.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26550.1); Has 436 Blast hits to 436 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 87; Plants - 61; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).1253e-007

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
113  43%
 
62  29%
 
122  29%

Unigene MembersMember information