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Information for unigene UN05245

FASTA Sequence
Unigene ID: UN05245Length: 1348 SSR 
GGACAACAACATCATCTTCTCTGGTCTTCATACTCTCCGCCGCTACATCCTCTGACCTCCTCCTTCGGCTCTGCTCAGATCCCTTG
TGAAACGTTACTGCCTTCAGAGATGATGATGATGACCTCTCTCGGTGGTGGTGGTGGTGGCGGCGGAGGGAGGTTTACGTCGTCTC
TTTCGGTTCCTCCTTCTGTTCCTCAGTCGCCTAACTACTCCGGTTGGATCCGATCACAGTCTTCTTCTATATTCGTTGAGCAGGAG
AAGTATCTTTCAGAGTTACTTGCAGAGCGTCGTAATCTTACTCCGTTCTTACCTGTGCTTCCACATGTATGTCGCCTACTTAACCA
GGAGATCTGTTCCATCGTCTCCGGGACCAAACTGGCTTAGCTCACCTGGTAGTCCGTCTGGTCTGATCGCTAAGCGAACAATCAGG
ATCGATATTCCAGTCGACGATTATCCAAATTTCAATTTCGTTGGTCGCCTCCTGGGTCCTAGAGGAAACTCCCTGAAGCGAGTTGA
AGCGAGTACTGGTTGCCGTTTTCTTATAAGAGGAAGAGGCAGTATAAAAGATCAATTTAAGGAGGAAATGCTGAGAGGAAAGCCTG
GATTTGAGCACTTAAGTGAGCCACTTCATATCTTAGTCGAAGCTGAGTTACCTATTGAAATAGTCGATGCACGTCTCATGCAAGCT
CGTGAAGTACTAGATGAACTTCTTACTCCTATGGAGGAAACTCATGATTTTTACAAGAAACAACAGCTGCGAGAGCTAGCATTGCT
GAATGGAGATCTTCGTGAAGGAGGATCTCCAATGTCTGGTTCTGTTTCTCCTTTCAGTAGCCTGGGTATGAAGAGAGCCAAAACAA
GAGAAGTGTAGAAAAAAAGGAATGCTTCAGAACACTGTTTTGTTGTTGTGATCTGTCCCACATCTCAAGGAATATGAAACCGGTCC
AGTTCGACGCAGAATGGCCAAACCTCTCTTGGCTACACAGTACTGTTCTCTTCTCCCCTGGAATATAGTTGCTGTATATATGCTTA
TGAATGTGTCTTTTGTGGGTCTATTTATCATTGTCCTGGAGAGAGATCAGATGACAACATTTCAAGGAAACACAAGGCATGACGAG
TCTTTTTCTCTCTCCCAGTTTTTGGGTTTGTTTTTATTTATTTCAATGCATCTTTTGTCAACTTATTTGGTTTTTTTGTCAACTTT
TTTAATTGTTTTTACTCTTTGGAACGGTTTGGTTCTAATTTCCAAGGGGGTTTTATAAGCTCTGTATGTTAGTAAAAGACAGAAAA
AAACAAAGATCATGATGGTATGTGTTTGCCTGTCTGGTAATGATGATATGTTTTTAGG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_200425 RNA-binding KH domain-containing protein [Arabidopsis thaliana]8096e-084
XP_002864436 KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]8096e-084
AAL87326 putative RNA-binding protein [Arabidopsis thaliana]8042e-083
AAM14070 unknown protein [Arabidopsis thaliana]7801e-080
CAA18222 putative protein [Arabidopsis thaliana]7801e-080

Swiss-Prot top hits (Blast detail)Scoree value
Q9FKT4 KH domain-containing protein At5g561408093e-085
Q0WLR1 KH domain-containing protein At4g264757806e-082
Q8GYR4 KH domain-containing protein At3g086205736e-058
Q9ZVI3 KH domain-containing protein At2g386105451e-054
Q8GWR3 KH domain-containing protein At1g096605101e-050

TrEMBL top hits (Blast detail)Scoree value
A9PGC0 Putative uncharacterized protein6965e-071
B9N5K8 Predicted protein6965e-071
B9GHJ4 Predicted protein6903e-070
B9T3W9 Nucleic acid binding protein, putative6841e-069
B4FU04 Putative uncharacterized protein6446e-065

Arabidopsis top hits (Blast detail)Scoree value
AT5G56140.1 KH domain-containing protein8092e-086
AT4G26480.1 KH domain-containing protein7805e-083
AT3G08620.1 KH domain-containing protein5735e-059
AT2G38610.1 KH domain-containing protein5459e-056
AT2G38610.2 KH domain-containing protein5459e-056

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
111  33%
 
82  67%

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