RadishBase

| | | |

Information for unigene UN05294

FASTA Sequence

Unigene ID:UN05294

Length: 1547

GGATCTCCTACAACCATCTGTCTCTCGGTGTGTTCTGTGATCCTCTCTCTCTCTCCACAAACCTAAAATCTCGGGACTTTCGATCT
CAGGGGAAGAGGATCGTGAAAGAGAGGACTCGCGATGACGATTGGTGCGACGCTTCTCGAATCGAATAAGGCTAAATGCTATGCTC
CGAGCTTCATCACCGTCAATCTCTGTCTTGCTCTTATCGATGGCGCTCTCGCTTTCATCGCATTCCTTCAGTTAACTCGGTTTCAC
CGGCGGGATAAACGAGTTGGGTGGACACGACAAAAAGTGCTTCATCTTATGATTGGCTCCTCAAACACTGGTTCTCTCATCTATTT
CGTGGCTGCCATTATAGCAACGTGCACAAGGTGGCATCATTGGTCCACCGCTTTAGGTTTTCTGCTTATGGCGTTTCCCAAAATTC
TGTTTCTTGCAACTTTTCTCCTGCTCCTCTCTTTCTGGGTAGATGTTTGCCATCAGGGAAATGGAGAAGAGGAAGATGAGGATGAT
GAAGAAAGCAACAGCATCCAGCAAGGGTTGCTTGAAAAAACCAAGATCAAACCAGGCTCTTCGAGTGCAAGTGACCGCAGAAAGTG
TTGCTCTTTCCATGAGATTCATCTCGGCACTAGGCAGAAGTTTGTTGTTGCGGCGGTTGTTCTTGTGTTCATCTTGATGATATCAT
TTGCTATCCTTATCTGGATTGCTTCCGGTGATAACTCTGCTGATCCTTCACTATTGGCTGAGGTGTATGTAGATATTTTCGCTTCA
ATAATCCTAATCACAGGAGGAGGAATATGTTTCTATGGAATGCGTCTGCTCTTTAATCTAAGGAAGGTAAGGTCCGAACAAGTTTC
AGCAGAGATGAGAAAGGTATCAGGTTTAGCAGGCGTCTCAGTTGTATGCTTCACCGTCAGCTCTTTACTCGCTCTTCTCACACACA
TTCCGCTTTTCTATCATTGGAACCCAAGCAAACTACATGGTGTCAGGGCATTGGTTCTTCTGATCATATACTATTTCATAGGTTCG
ACCGTACCATTGGCTTTCGTTTTGTGGGTTTTGAGGGAGTTACCTCCTCAAGAGATTGTGAGTAGACGAGAAGAACAGAGAAGAAT
CACTTATGTCAACTACGAAAGTGTTGCAAGGCAGACTCAGCAGCAGCAGTGGACTGCCACAACCGTTTTTAAGAATCAGGTTTCAA
AGGCAAGTCCAATATGACCCCAAATAAACATATATCATAGTTGATAGCATGGAGTGAAAATCCGCCAAAGTTCCTCTCTTGTTACC
AGGAAAAGAAAAAAACCTCGTGGAGTTGCGTGATAGTTGTAGACCAAACAAAGGTGTGTCGTGGTAGAAGGAAACGAAAGTAGAAA
CAACTCGTTTTTTTCTATCTCTCTCTCTTTTTTGGAAGACAACAGTTTGTTTACAAAAAAGATAGAATGGAGGTCCTGTAAATATT
TTTTTCTTTGAACGACAGATTCTTTATTTTTTAGTTTTAGTTGCATGAAATGTGATCTTGTGGATACATATCTTTTACTTATTTC

Annotation(GO term)

GenBank top hits (Blast detail)	Score	E value
NP_850719 uncharacterized protein [Arabidopsis thaliana]	1628	8e-179
XP_002876488 hypothetical protein ARALYDRAFT_486377 [Arabidopsis lyrata subsp. lyrata]	1605	4e-176
NP_567077 uncharacterized protein [Arabidopsis thaliana]	1597	3e-175
NP_001030892 uncharacterized protein [Arabidopsis thaliana]	1482	7e-162
CAB86937 putative protein [Arabidopsis thaliana]	1379	6e-150

Swiss-Prot top hits	Score	E value
No hits found

TrEMBL top hits (Blast detail)	Score	E value
Q3EAH7 AT3G59090 protein	1628	5e-179
Q945Q2 AT3g59090/F17J16_140	1597	2e-175
Q2V3N2 AT3G59090 protein	1482	4e-162
Q9LYS7 Putative uncharacterized protein F17J16_140	1387	5e-151
B9H827 Predicted protein	1023	7e-109

Arabidopsis top hits (Blast detail)	Score	E value
AT3G59090.1 EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: TOM1 (TOBAMOVIRUS MULTIPLICATION 1); protein binding (TAIR:AT4G21790.1); Has 115 Blast hits to 115 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 108; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).	1629	2e-181
AT3G59090.2 EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: TOM1 (TOBAMOVIRUS MULTIPLICATION 1); protein binding (TAIR:AT4G21790.1); Has 115 Blast hits to 115 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 108; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).	1597	1e-177
AT3G59090.3 LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: TOM1 (TOBAMOVIRUS MULTIPLICATION 1); protein binding (TAIR:AT4G21790.1); Has 115 Blast hits to 115 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 108; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).	1483	2e-164

EST library breakdown for ESTs in the assembly


10	2			25%


6	3			38%


21	2			25%


20	1			13%

Unigene Members