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Information for unigene UN05350
| FASTA Sequence |
| Unigene ID: UN05350 | Length: 1453 |
SSR | | GGATCATTCCTTCTTCTTTTGCTTCTCCATCCTCTCTCTCTCTCTCATGGTACATTAGATTCCAAATATATACGATCAAGCATTCT
CGTCTGCTTAGCTTACAATTCCGAAATGGATCTTCATTAACACTATTACCTGAAAATCTCAAGAGAGAATAAAAAAAGTTGGAAGC
TTTTGATTTCATCCATCCATCTTCTGTTTTCTTTTTCTTTTTTTTTTCTGGTGAATTGTTTGTTTGTTGTGGTGGGGTTTTCTAAA
ATTACTTTGAAATTTTCTGATCTAATGGCTGATGTTGATTCTGTTCACGACCTTGTCACTGACGGAATTGAGAAGAGCCTGGTGAC
CGATTCTAAACCGGAATCGGAATCGGACCTCAAACCCAAATCTAAACCGGAACCGGGCGTTGATCAGATGAAGAAGCTTGCGCTGA
ATCCTGAAGCTAAATAGTTCTTTCCTTCTTACAAGAAGAAGAACGATCAGTCTCTGTCTTCTGAAGATTTTGCGACCGCTAAGAAG
CTGTCTGGTGAAGATCTTAAAGCCGACAACAAAAAGGATGGCAATTTCCGGAGGAGCAGAAACAATTATAACCAAGGGAGGAAAGT
GAGGTTAACTGGAAGAGGTTCCAAGGCTCAAAGAGAGGATAGTATTAGAAGAACTGTATATGTCTCTGACATTGATCAGAGTGTGA
CTGAGGAAGTCTTAGCTGGTTTGTTCAGCAGCTATGGACAAGTTGTTGATTGTAGAATCTGTGGAGATCCACATTCAGTTCTTCGC
TTTGCCTTTGTTGAGTTCTCTGATGACCATGGTGCAAGGGCTGCTTTAAGTGTAGGTGGAACAATGATCGGTTATTACCCAGTTAG
GGTCTTGCCTTCAAAGACTGCTATTCTTCCTGTGAATCCCACATTTCTCCCCAGGTCAGAAGATGAAAGGGAGATGTGTAGCAGAA
CCATCTACTGCACTAATGTTGACAAGAATGCCACTGAAGATGATGTTAGAACCTTCTTTGAGTCTGCCTGCGGTGAGGTAACTCGC
ATAAGGCTTCTTGGTGACCAGTTGCATTCTACTCGTATAGCTTTTGTTGAATTTGCCATGGCAGAGAGTGCAGTTGGGGCGCTCAA
CTGCAGTGGAGTAGTTTTAGGATCGCAGCCGATAAGGGTAAGCCCTTCAAAGACACCAGTGAGACCAAGATTCAGTCGATCACCAT
CCTCAAACTAGGAGGGAAACAGAACCAACCCCAAGAGGCTTTTGTTGGTGCTGGAGAGTGATGAAAGACATTTCGTTTTTTTCCTT
GAGTAATTTTTCTTTTCAGTTATCTTTTTTAATTGTTCTCTAATCTCTAGAGCAGAGTTATATCTCCAGTTCTGTAGTATCTGGAA
ACAAATGCAACAATGAACATGCTTTTTGAGTTCTTGTTTTGAGACTCATTTCAGTTTATAACATTTTTCTCAAATGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_175769 CTC-interacting domain 8 protein [Arabidopsis thaliana] | 1192 | 3e-128 |
| XP_002894457 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1085 | 6e-116 |
| NP_188063 CTC-interacting domain 9 protein [Arabidopsis thaliana] | 1080 | 2e-115 |
| NP_001031182 CTC-interacting domain 8 protein [Arabidopsis thaliana] | 1016 | 7e-108 |
| BAD43546 putative RNA-binding protein [Arabidopsis thaliana] | 1013 | 1e-107 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8WXA9 Splicing factor, arginine/serine-rich 12 | 148 | 1e-008 |
| Q8BZX4 Splicing factor, arginine/serine-rich 12 | 148 | 1e-008 |
| Q9JKL7 Splicing factor, arginine/serine-rich 12 | 148 | 1e-008 |
| Q5B630 Polyadenylate-binding protein, cytoplasmic and nuclear | 124 | 7e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C8M0 At1g53650 | 1192 | 2e-128 |
| Q9LRR6 Similarity to RNA-binding protein | 1080 | 2e-115 |
| Q67ZZ8 Putative RNA-binding protein (Fragment) | 1013 | 1e-107 |
| Q9LPI3 T3F20.1 protein | 1006 | 6e-107 |
| C6TDF4 Putative uncharacterized protein | 936 | 8e-099 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G53650.1 CID8 (CTC-INTERACTING DOMAIN 8); RNA binding / protein binding | 1193 | 7e-131 |
| AT3G14450.1 CID9 (CTC-Interacting Domain 9); RNA binding / protein binding | 1081 | 7e-118 |
| AT1G53650.2 CID8 (CTC-INTERACTING DOMAIN 8); RNA binding / protein binding | 1017 | 2e-110 |
| AT1G32790.1 RNA-binding protein, putative | 841 | 5e-090 |
| AT4G10610.1 CID12; RNA binding | 811 | 1e-086 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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