Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN05350

FASTA Sequence
Unigene ID: UN05350Length: 1453 SSR 
GGATCATTCCTTCTTCTTTTGCTTCTCCATCCTCTCTCTCTCTCTCATGGTACATTAGATTCCAAATATATACGATCAAGCATTCT
CGTCTGCTTAGCTTACAATTCCGAAATGGATCTTCATTAACACTATTACCTGAAAATCTCAAGAGAGAATAAAAAAAGTTGGAAGC
TTTTGATTTCATCCATCCATCTTCTGTTTTCTTTTTCTTTTTTTTTTCTGGTGAATTGTTTGTTTGTTGTGGTGGGGTTTTCTAAA
ATTACTTTGAAATTTTCTGATCTAATGGCTGATGTTGATTCTGTTCACGACCTTGTCACTGACGGAATTGAGAAGAGCCTGGTGAC
CGATTCTAAACCGGAATCGGAATCGGACCTCAAACCCAAATCTAAACCGGAACCGGGCGTTGATCAGATGAAGAAGCTTGCGCTGA
ATCCTGAAGCTAAATAGTTCTTTCCTTCTTACAAGAAGAAGAACGATCAGTCTCTGTCTTCTGAAGATTTTGCGACCGCTAAGAAG
CTGTCTGGTGAAGATCTTAAAGCCGACAACAAAAAGGATGGCAATTTCCGGAGGAGCAGAAACAATTATAACCAAGGGAGGAAAGT
GAGGTTAACTGGAAGAGGTTCCAAGGCTCAAAGAGAGGATAGTATTAGAAGAACTGTATATGTCTCTGACATTGATCAGAGTGTGA
CTGAGGAAGTCTTAGCTGGTTTGTTCAGCAGCTATGGACAAGTTGTTGATTGTAGAATCTGTGGAGATCCACATTCAGTTCTTCGC
TTTGCCTTTGTTGAGTTCTCTGATGACCATGGTGCAAGGGCTGCTTTAAGTGTAGGTGGAACAATGATCGGTTATTACCCAGTTAG
GGTCTTGCCTTCAAAGACTGCTATTCTTCCTGTGAATCCCACATTTCTCCCCAGGTCAGAAGATGAAAGGGAGATGTGTAGCAGAA
CCATCTACTGCACTAATGTTGACAAGAATGCCACTGAAGATGATGTTAGAACCTTCTTTGAGTCTGCCTGCGGTGAGGTAACTCGC
ATAAGGCTTCTTGGTGACCAGTTGCATTCTACTCGTATAGCTTTTGTTGAATTTGCCATGGCAGAGAGTGCAGTTGGGGCGCTCAA
CTGCAGTGGAGTAGTTTTAGGATCGCAGCCGATAAGGGTAAGCCCTTCAAAGACACCAGTGAGACCAAGATTCAGTCGATCACCAT
CCTCAAACTAGGAGGGAAACAGAACCAACCCCAAGAGGCTTTTGTTGGTGCTGGAGAGTGATGAAAGACATTTCGTTTTTTTCCTT
GAGTAATTTTTCTTTTCAGTTATCTTTTTTAATTGTTCTCTAATCTCTAGAGCAGAGTTATATCTCCAGTTCTGTAGTATCTGGAA
ACAAATGCAACAATGAACATGCTTTTTGAGTTCTTGTTTTGAGACTCATTTCAGTTTATAACATTTTTCTCAAATGG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_175769 CTC-interacting domain 8 protein [Arabidopsis thaliana]11923e-128
XP_002894457 predicted protein [Arabidopsis lyrata subsp. lyrata]10856e-116
NP_188063 CTC-interacting domain 9 protein [Arabidopsis thaliana]10802e-115
NP_001031182 CTC-interacting domain 8 protein [Arabidopsis thaliana]10167e-108
BAD43546 putative RNA-binding protein [Arabidopsis thaliana]10131e-107

Swiss-Prot top hits (Blast detail)Scoree value
Q8WXA9 Splicing factor, arginine/serine-rich 121481e-008
Q8BZX4 Splicing factor, arginine/serine-rich 121481e-008
Q9JKL7 Splicing factor, arginine/serine-rich 121481e-008
Q5B630 Polyadenylate-binding protein, cytoplasmic and nuclear1247e-006

TrEMBL top hits (Blast detail)Scoree value
Q9C8M0 At1g5365011922e-128
Q9LRR6 Similarity to RNA-binding protein10802e-115
Q67ZZ8 Putative RNA-binding protein (Fragment)10131e-107
Q9LPI3 T3F20.1 protein10066e-107
C6TDF4 Putative uncharacterized protein9368e-099

Arabidopsis top hits (Blast detail)Scoree value
AT1G53650.1 CID8 (CTC-INTERACTING DOMAIN 8); RNA binding / protein binding11937e-131
AT3G14450.1 CID9 (CTC-Interacting Domain 9); RNA binding / protein binding10817e-118
AT1G53650.2 CID8 (CTC-INTERACTING DOMAIN 8); RNA binding / protein binding10172e-110
AT1G32790.1 RNA-binding protein, putative8415e-090
AT4G10610.1 CID12; RNA binding8111e-086

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
61  25%
 
113  75%

Unigene MembersMember information