 |
Information for unigene UN05370
| FASTA Sequence |
| Unigene ID: UN05370 | Length: 1956 |
SSR | | GAGCTCATAGCTAAACTGAGGCACCGTCATTTGGTTAGTGTGCTAGGGCACTGCTTTGAGTGCTACTTAGATGATTCGACAGTCAG
CAGAATGTTCTTCGTCTTTGAGTATGTCCCAAATGGAGAACTCAGGAGCTGGATCTCAGGTGGGCATATGGGAAGATTGCTTACTT
GGGAACAGCGCATAAGCATAGCCATAGGTGTAGCAAAAGGGATCCAGTTCTTGCATGCTGGTATTGTGCCTGGTGTTTATGATAAC
AACCTGAGAATAACAGACGTTTTGCTTGATAATAACCTCGCTGCAAAAATCAGTAGCTATAACCTTCCATTACTTATGGAAGGTCT
GGGAAAGGTGGGGCAAGTAGTATCTCGAACCTGTCCCAAAGGCACTCCAAGCATCAAAGAAGATGATAAAATAGATATCTATGACT
TTGGAGTGATCTTGCTTGAGCTAATAGTGGGAAGACCTTTGAGAGCAAAGGGTCAAGTCGATGTTCTAAAAGAGCAGTTACATGCA
AGCATCTCAGCGGATGATGGAGCGCGTAGGAGCATGGTGGATCCAACGGTCCATAAAACTTGTTCAGACCAATCACTAAAGACAAT
GATGGAAATATGTGTAAGGTGTCTCATCAAAGACCCTTTAGAGCGGCCTTCCATTGAAGATGTCCTGTGGAATCTTCAGTTTGCTT
CTCAAGTCCAAGAAGGTTGGCTACAAAACAGCAATCCTCCGAGCATTCGCGGCTCGCCTTCTCCTGCAGCTTCCTCTCTTCCTCCT
CCCTCTCGTTTGCACATAACAACAATCGAATCTCCCCGAGATTCAGGATATGAAGAACACGAGAGATAGGGATACAAGGGTTTTGG
TTTGGTTAATTAGTTGTGTGCTCTTTCTATGTAGAGGAACCTAACAATAAACTGGTTATCTCATTAAAAAAATAAACTACCAACTC
TACATATATCTTGGTATACCGTATACTGTTGATTACTATATATATTATTCTCTTTTTTCCAACATTATTAAAAAGGAAATATATAA
ATTAAAGACAAGGCCTAGTTATATATTCATATCCGGGGAAAACCCTCCGCAGCCCCCGTCGTCAAACCAACAGCCACCGAAAAATC
AGTACCGTTCTCTTGCTCATCCTCATGATGATTTATTGTAACTTGCTGATGCCGTGGCATAGGCTGCAACGAATGTTCTAAGTTAG
CGGGAACCATGACGTCATAGCTAACGGCCGCTGCTGCTGTCGCGGTGAAGCTGTTCATGGTTGCTCCGGCAAGAGTGGTGGAGGCG
GATGAGTTGTTGGAGTATTCGGTTTGTTGCATAACGACTAATTGTTGTTGTTGGTGGTGGCTTTGTTGTTGTTGTTGTTGCATAAC
GTTAGCCATTGCGACTCTACTATTGATTAGTTGTGATTGCACCAGCGATAACTCAGCTTGTAGCGAGGCCACCTGTTGTTGGAGGG
CAAGGATAGTTGAGACGCAGCCATACACAGGATCAGAGAGCCTAGCCTGAGCCTCATATGAAATCGTAACCACTGCGTCGTGACAA
CGGTTCACCGGAATATGATGCAACAGTTTAGACACGTTGCTGGCTCCAAACACCTTATGGACCGCCGCAAACCTAGCCGCTCCTTG
GTCTGACCCGAAATGTGGAGCGAAAATGCATCCACTCGCACACTTCCTTCTCAAGAACTTGCAAGCCCCACAAGGCGAGGCCATTA
CTGTCCCCGTCGTTGCAGTGGCCGCCATGGCTCCTCCTCCGTCGGAAGAAAATGATGATGTTGTAGTACGTTGTGAGGTTCGTTTC
CCGGCTGCTGATTTGCGACGAGAATCTGAGGTGTTGTGGCTTCTTTGCTGATCAGCCATAACTAACACAAGTATTAATTAATTAGG
TTTAGCTGATGAGAGTTTCTTGTGAACAAGTGATATCTATAAATGTATTTTGTTATTGGTGTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002884410 hypothetical protein ARALYDRAFT_477625 [Arabidopsis lyrata subsp. lyrata] | 1350 | 2e-146 |
| NP_566213 leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] | 1346 | 5e-146 |
| AAF00640 hypothetical protein [Arabidopsis thaliana] | 1251 | 5e-135 |
| XP_002882305 LOB domain protein 20 [Arabidopsis lyrata subsp. lyrata] | 1054 | 4e-112 |
| NP_187026 LOB domain-containing protein 20 [Arabidopsis thaliana] | 1049 | 1e-111 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SRV3 LOB domain-containing protein 20 | 1049 | 6e-113 |
| C0LGJ9 Probable LRR receptor-like serine/threonine-protein kinase At2g02780 | 481 | 4e-047 |
| O22131 LOB domain-containing protein 18 | 422 | 3e-040 |
| Q9SLB7 LOB domain-containing protein 16 | 418 | 9e-040 |
| O81323 LOB domain-containing protein 30 | 407 | 2e-038 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LFN2 Leucine-rich repeat receptor-like protein kinase | 1346 | 4e-146 |
| Q9SRV4 F20H23.20 protein | 1251 | 4e-135 |
| A5ANY5 Putative uncharacterized protein | 880 | 4e-092 |
| B9SI80 Leucine-rich repeat protein, putative | 878 | 7e-092 |
| B9IPT7 Predicted protein | 867 | 1e-090 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G03770.1 leucine-rich repeat transmembrane protein kinase, putative | 1347 | 1e-148 |
| AT3G03760.1 LBD20 (LOB DOMAIN-CONTAINING PROTEIN 20) | 1049 | 5e-114 |
| AT1G14390.1 leucine-rich repeat transmembrane protein kinase, putative | 514 | 6e-052 |
| AT2G02780.1 leucine-rich repeat transmembrane protein kinase, putative | 481 | 4e-048 |
| AT5G63410.1 leucine-rich repeat transmembrane protein kinase, putative | 453 | 7e-045 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
