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Information for unigene UN05370

FASTA Sequence
Unigene ID: UN05370Length: 1956 SSR 
GAGCTCATAGCTAAACTGAGGCACCGTCATTTGGTTAGTGTGCTAGGGCACTGCTTTGAGTGCTACTTAGATGATTCGACAGTCAG
CAGAATGTTCTTCGTCTTTGAGTATGTCCCAAATGGAGAACTCAGGAGCTGGATCTCAGGTGGGCATATGGGAAGATTGCTTACTT
GGGAACAGCGCATAAGCATAGCCATAGGTGTAGCAAAAGGGATCCAGTTCTTGCATGCTGGTATTGTGCCTGGTGTTTATGATAAC
AACCTGAGAATAACAGACGTTTTGCTTGATAATAACCTCGCTGCAAAAATCAGTAGCTATAACCTTCCATTACTTATGGAAGGTCT
GGGAAAGGTGGGGCAAGTAGTATCTCGAACCTGTCCCAAAGGCACTCCAAGCATCAAAGAAGATGATAAAATAGATATCTATGACT
TTGGAGTGATCTTGCTTGAGCTAATAGTGGGAAGACCTTTGAGAGCAAAGGGTCAAGTCGATGTTCTAAAAGAGCAGTTACATGCA
AGCATCTCAGCGGATGATGGAGCGCGTAGGAGCATGGTGGATCCAACGGTCCATAAAACTTGTTCAGACCAATCACTAAAGACAAT
GATGGAAATATGTGTAAGGTGTCTCATCAAAGACCCTTTAGAGCGGCCTTCCATTGAAGATGTCCTGTGGAATCTTCAGTTTGCTT
CTCAAGTCCAAGAAGGTTGGCTACAAAACAGCAATCCTCCGAGCATTCGCGGCTCGCCTTCTCCTGCAGCTTCCTCTCTTCCTCCT
CCCTCTCGTTTGCACATAACAACAATCGAATCTCCCCGAGATTCAGGATATGAAGAACACGAGAGATAGGGATACAAGGGTTTTGG
TTTGGTTAATTAGTTGTGTGCTCTTTCTATGTAGAGGAACCTAACAATAAACTGGTTATCTCATTAAAAAAATAAACTACCAACTC
TACATATATCTTGGTATACCGTATACTGTTGATTACTATATATATTATTCTCTTTTTTCCAACATTATTAAAAAGGAAATATATAA
ATTAAAGACAAGGCCTAGTTATATATTCATATCCGGGGAAAACCCTCCGCAGCCCCCGTCGTCAAACCAACAGCCACCGAAAAATC
AGTACCGTTCTCTTGCTCATCCTCATGATGATTTATTGTAACTTGCTGATGCCGTGGCATAGGCTGCAACGAATGTTCTAAGTTAG
CGGGAACCATGACGTCATAGCTAACGGCCGCTGCTGCTGTCGCGGTGAAGCTGTTCATGGTTGCTCCGGCAAGAGTGGTGGAGGCG
GATGAGTTGTTGGAGTATTCGGTTTGTTGCATAACGACTAATTGTTGTTGTTGGTGGTGGCTTTGTTGTTGTTGTTGTTGCATAAC
GTTAGCCATTGCGACTCTACTATTGATTAGTTGTGATTGCACCAGCGATAACTCAGCTTGTAGCGAGGCCACCTGTTGTTGGAGGG
CAAGGATAGTTGAGACGCAGCCATACACAGGATCAGAGAGCCTAGCCTGAGCCTCATATGAAATCGTAACCACTGCGTCGTGACAA
CGGTTCACCGGAATATGATGCAACAGTTTAGACACGTTGCTGGCTCCAAACACCTTATGGACCGCCGCAAACCTAGCCGCTCCTTG
GTCTGACCCGAAATGTGGAGCGAAAATGCATCCACTCGCACACTTCCTTCTCAAGAACTTGCAAGCCCCACAAGGCGAGGCCATTA
CTGTCCCCGTCGTTGCAGTGGCCGCCATGGCTCCTCCTCCGTCGGAAGAAAATGATGATGTTGTAGTACGTTGTGAGGTTCGTTTC
CCGGCTGCTGATTTGCGACGAGAATCTGAGGTGTTGTGGCTTCTTTGCTGATCAGCCATAACTAACACAAGTATTAATTAATTAGG
TTTAGCTGATGAGAGTTTCTTGTGAACAAGTGATATCTATAAATGTATTTTGTTATTGGTGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002884410 hypothetical protein ARALYDRAFT_477625 [Arabidopsis lyrata subsp. lyrata]13502e-146
NP_566213 leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]13465e-146
AAF00640 hypothetical protein [Arabidopsis thaliana]12515e-135
XP_002882305 LOB domain protein 20 [Arabidopsis lyrata subsp. lyrata]10544e-112
NP_187026 LOB domain-containing protein 20 [Arabidopsis thaliana]10491e-111

Swiss-Prot top hits (Blast detail)Scoree value
Q9SRV3 LOB domain-containing protein 2010496e-113
C0LGJ9 Probable LRR receptor-like serine/threonine-protein kinase At2g027804814e-047
O22131 LOB domain-containing protein 184223e-040
Q9SLB7 LOB domain-containing protein 164189e-040
O81323 LOB domain-containing protein 304072e-038

TrEMBL top hits (Blast detail)Scoree value
Q8LFN2 Leucine-rich repeat receptor-like protein kinase13464e-146
Q9SRV4 F20H23.20 protein12514e-135
A5ANY5 Putative uncharacterized protein8804e-092
B9SI80 Leucine-rich repeat protein, putative8787e-092
B9IPT7 Predicted protein8671e-090

Arabidopsis top hits (Blast detail)Scoree value
AT3G03770.1 leucine-rich repeat transmembrane protein kinase, putative13471e-148
AT3G03760.1 LBD20 (LOB DOMAIN-CONTAINING PROTEIN 20)10495e-114
AT1G14390.1 leucine-rich repeat transmembrane protein kinase, putative5146e-052
AT2G02780.1 leucine-rich repeat transmembrane protein kinase, putative4814e-048
AT5G63410.1 leucine-rich repeat transmembrane protein kinase, putative4537e-045

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  40%
 
81  20%
 
72  40%

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