RadishBase

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Information for unigene UN05408

FASTA Sequence

Unigene ID: UN05408	Length: 1178	SSR
GTACAAAACTCAATATTTTCAGTATGTATAAACATATCTATTTGTGTGGTTGTGTGTGTGTGTGTACGTCAGTACGTGAGCACATA AGTGGTGAGGAAAAGGAAAACACAATGATGCATGTTAATAGAGGAGTTTAGATTTGTAACTTGTAACCTTTTTTCTATTTAATTAG ATTTGATCTCCACTCCTTAATAGCAGAAAGAAGAGACTGATTAGGAAGGAGAGTTTGGTTGGTGAAGGGCAAATCCGTCATTGGAG ATTTATGATTCTTCTCAAGCCATTCAATAATGGCTCTCTTCTCGTATGTATATCCATCAGAAGCTACACATGGATTATCCATCACA TCCTTAGTTATTGGACAGTAGAAATGCCCCGGAGCCTGGTGGTTATTGTCTGCTAGGGTTTCAGAAAACACGTTTCTTGCGTTACA AGCAACGTTCTTTAACCGTTCAAGAACCGGTAGAATCTCTTTCCCTAGATCAGGACGGTCACGCTTCCTCATCTCCGCGCACCTAA GCCCTATCATAACCATCTCTTTCGCTTCCTTAACCGGCCAATCACCAGCAGTCTTATCCAAGATCTCAGAAAACTTCCCGGTTTGA TCTCTCAACGCTTTCTCTAACGAATGAGCCAAACCCATTGCTGACCTAGCCGTGGCTAGCTGAAGAAGTATGATTCCAAACGCGTA GATATCGGACTCTGGAGTCACCACACCGGTTCTTTGGTACTCGGGATCAATGTAGAAAAATGTTCCTACCGGACCGGTTTGGTTAA AAACGGTTGAGGCATGAGAAGGGTCGAGGTTAACCATCTTGGAGAGGCCTACGTCTCCGATTTTGCTCACATTGTTCCGGTCTAGG AGTATATTTGCCGGTTTAAGATCACGGTGAACGATTGGTCTTGGCTCGTTTGTGTGGAGAAAGTAGAGAGCTGAAGCTATCTCCCA AGCGATCCTGAACCGCTCAAACCACCGTAACGGCGGTTGCAGTGCGTCAGGGTTTGGTCTGCGTGTCATGAGTCTTTCCACGAGGC TTCCGTTGTGCATATACTCGTAGACTAAGCTGCCGTGGTCAGGACATGCGCCAAGGAGGAGAAGCAAGTGTGGGTGACGAATCTTG CTAAGAATCTCATCTGTATAAGACATTCTCCTGCCTTGAATATCATTTCCTCCATACCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAB09000 unnamed protein product [Arabidopsis thaliana]	1523	8e-167
NP_200964 U-box domain-containing protein 51 [Arabidopsis thaliana]	1523	8e-167
BAF00647 hypothetical protein [Arabidopsis thaliana]	1523	8e-167
NP_001190589 U-box domain-containing protein 51 [Arabidopsis thaliana]	1523	8e-167
XP_002864740 kinase family protein [Arabidopsis lyrata subsp. lyrata]	1521	1e-166

Swiss-Prot top hits (Blast detail)	Score	e value
Q9FKG5 U-box domain-containing protein 51	1523	3e-168
Q9FKG6 U-box domain-containing protein 52	980	3e-105
Q9SW11 U-box domain-containing protein 35	978	5e-105
Q9LU47 Putative U-box domain-containing protein 53	944	5e-101
Q8S8S7 U-box domain-containing protein 34	836	2e-088

TrEMBL top hits (Blast detail)	Score	e value
B9R9X0 Receptor protein kinase, putative	998	4e-106
B8B2B7 Putative uncharacterized protein	977	1e-103
Q0DEQ5 Os06g0140800 protein	977	1e-103
Q84P73 Putative serine/threonine protein kinase (Fragment)	977	1e-103
C5Z3S8 Putative uncharacterized protein Sb10g002760	965	3e-102

Arabidopsis top hits (Blast detail)	Score	e value
AT5G61560.1 protein kinase family protein	1524	2e-169
AT5G61550.1 protein kinase family protein	980	3e-106
AT4G25160.1 protein kinase family protein	978	5e-106
AT5G51270.1 protein kinase family protein	944	4e-102
AT2G19410.1 protein kinase family protein	836	1e-089

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


18	1			33%


11	2			67%

Unigene Members	Member information