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Information for unigene UN05418
| FASTA Sequence |
| Unigene ID: UN05418 | Length: 736 |
SSR | | CTTGAACTTTGCTTACTTGCAGATTTGTTCATTAACTAAGAACAAAGATGTCATAAAGATTCCAGCTTTGCTGATAATATTCATTA
CATAGGCTCTCAAAAGGATGATACATGGTTTACCAATTCTATCAGGAACAGTCTGTTCATGCAATGCAAGTGCCCATCGCCTCATT
GTAGTTTCAGAGCTTCACTTCCACATCAACACCAGCAGGAAGATCCAGCTGCATCAAGGAGTCGATGGTTTGAGCAGTAGGGTAGA
GAATATCAATCATCCGCTGGTGAGTCCTGATCTCAAAATGGAACCTTGCATCCTTGTGGACGTGGGGAGACTTGAGAACACAGTAA
ATACGCTTCTTGGTTGGCAAGGGAACAGGACCCATCGTCTTGGCATTGGTGTTCCTCGCAGCGTCTAGTATCTGCTTGCATGAGTC
CTCAATGAGAGGCACCCAGTATGACCTAAGCTTTATCCTAATCTTTTGCTTTGGCGCCATCTTATCTGCGTCAACACTTATTGAGG
AAGAGCTCGGAACCTCGGAGAAGTCATCAGAGGCGGGTTCATCGAGGGTTTCCGGAGGGTTTGTTAAGGACGCAGGAGCCAATGCC
GCCATGAGTAGACGAAGAAGAAGAAGAAGATGGAAGCAAAGAGACTTTCTGTTTGGTGGAAGAAGAAGATGAAAGGTTGGCGAAAG
AGGGTAATATGAAGGAAGTTACAGAAGAAACCGCCATTGAATTTCCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABL97980 30S ribosomal protein S10-like [Brassica rapa] | 665 | 1e-067 |
| AAW22623 30S ribosomal protein S10-like [Brassica napus] | 658 | 7e-067 |
| NP_187919 30S ribosomal protein S10 [Arabidopsis thaliana] | 640 | 9e-065 |
| XP_002884945 hypothetical protein ARALYDRAFT_478688 [Arabidopsis lyrata subsp. lyrata] | 637 | 2e-064 |
| ABB97026 unknown [Brassica rapa] | 635 | 3e-064 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LK61 30S ribosomal protein S10, chloroplastic | 640 | 4e-066 |
| Q9M4Y3 30S ribosomal protein S10, chloroplastic | 549 | 1e-055 |
| P17009 Cyanelle 30S ribosomal protein S10 | 354 | 6e-033 |
| B7K833 30S ribosomal protein S10 | 348 | 3e-032 |
| P51286 30S ribosomal protein S10, chloroplastic | 347 | 4e-032 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A1YMX4 30S ribosomal protein S10-like | 665 | 8e-068 |
| Q5MD13 30S ribosomal protein S10-like | 658 | 5e-067 |
| Q2V615 Putative uncharacterized protein | 635 | 2e-064 |
| B9S9Q5 30S ribosomal protein S10, putative | 605 | 7e-061 |
| C6T2U8 Putative uncharacterized protein | 589 | 5e-059 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G13120.1 30S ribosomal protein S10, chloroplast, putative | 641 | 3e-067 |
| AT3G47370.2 40S ribosomal protein S20 (RPS20B) | 117 | 2e-006 |
| AT3G45030.1 40S ribosomal protein S20 (RPS20A) | 117 | 2e-006 |
| AT3G47370.1 40S ribosomal protein S20 (RPS20B) | 117 | 2e-006 |
| AT3G47370.3 40S ribosomal protein S20 (RPS20B) | 117 | 2e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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