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Information for unigene UN05452

FASTA Sequence
Unigene ID: UN05452Length: 1320 SSR 
GCTCAAGATATCAATTCAAAAGGGAAGAAAAGAAACGGGGTTACATTAAAAAAAAAAAAGAAATCAAATAGAGATTAAAGTCTGGA
AATAACAAACAAGAAATCCCATGGAAACATCAGCCCTGAAAGTAAAATCGTCTAAAAGGGTTTCGGGGTCATGTATCAACAGATAT
CCACTTTTCACACTGTCCTAAAAGAGCAAATTCTTCTTCTTCTTCTTCTTATCATTGGTCTTTGCATCCAAAAATAGTAGTGGACG
GAAGGCGCACACTGTTGGGCAGTCATATAAAATAGAAGTCATGACCAGATCGATGGAGTAAATTTTTTCCCATGTCTTGTTGCCTG
AATTCAAGGACCATATCACTTGGTCGGGCGACTTCATGTGCGACACGCACAAACGGTTGTCGAGGTTGCACAAGACCATCGCGTAA
GGATTATCATCATGTGAATTGGCGGGAAAGGGAGGTTTAGAAGAAATGACTTGAAAAGCCTCGGTGTGGAGATCAAAGGATACAAC
TTTGGTTTCCTCGCAATCTGTGAGCCAATGAAGCGAACCATCTACAAACACGGGATCGGCGACCCCAACAACCCGATAAGGAGCAG
AGGGAGTGACATACCTCCAAGCATTGGAGACGAAGTCGAAAACTTCGCATGTGGTAGCGTTTTTGTCAAGGTCTATTTCTGAAGAG
TTGTACAGCCAAACAAGCTTGTAAGTAGCTATTATTATGTCTTTACCGAATCCAAGCTTAAAGAGGCCGTGCTTAGTATTAACGTA
ACTCTGTCCTTGGCTGATAATGAGTTGTTGGAGTCGGGAGAGAGGAAGAGGACGATACCATCTTGTGGCGGGGTTGACAACATAAC
CGGATTCCAAGGGATGGTAGAGACAAACCAGACCGTCACAGCTATTATCGGACACTAAGTAGCGTCGTCCTGTTGCCTTGACCTTA
TTATCCCAAGGAGTAGGGATCTTGACCGATGAGGATGAACCCAATACCAGTGTTCTTAGAGATTCGTCACAACTTGAGGACACCAT
GAGAACATCTGGATCTCCTCCTCCTGACTCTTGATGCTGCTTCGACTGCCTCTCCTGGAAGTGACGTGATTCGATCGTTGCTTTCC
ATTGCTTCGATACAGACTTGAATCTCAGCAGAGATCTCACCGGAAGTCTCTCCAAGATGTGCTCTACCACGTCGTGGGGCAGCCCT
TCTTCCATCATCATCACCATCATCAATCGACACTTTCCTTTTCGTAAATATTTCAATTACTCGATTTCTTGATTGATTTTCATCAC
ATCTCTCGTCCTTCAAACCACACACAACCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_172436 F-box/LRR and kelch-repeat containing protein [Arabidopsis thaliana]10821e-115
XP_002877486 predicted protein [Arabidopsis lyrata subsp. lyrata]10434e-111
XP_002889764 F-box family protein [Arabidopsis lyrata subsp. lyrata]8096e-084
CAA16923 putative protein [Arabidopsis thaliana]8006e-083
XP_002871416 hypothetical protein ARALYDRAFT_487863 [Arabidopsis lyrata subsp. lyrata]7853e-081

Swiss-Prot top hits (Blast detail)Scoree value
O04488 F-box/LRR-repeat/kelch-repeat protein At1g0965010825e-117
Q9LX89 F-box protein At5g103408424e-089
Q7X7A9 F-box protein At1g112706694e-069
Q9LPW2 Putative F-box/kelch-repeat protein At1g128704931e-048
O80777 F-box protein At2g342804105e-039

TrEMBL top hits (Blast detail)Scoree value
O49464 Putative uncharacterized protein AT4g194608004e-083
Q9M121 Putative uncharacterized protein AT4g016405854e-058
Q9ZSI2 T15B16.15 protein5712e-056
Q9LE79 F5O11.244662e-044
A0MDV8 Putative uncharacterized protein (Fragment)3391e-029

Arabidopsis top hits (Blast detail)Scoree value
AT1G09650.1 F-box family protein10862e-118
AT5G10340.1 F-box protein-related / SLF-related8461e-090
AT1G14430.1 glyoxal oxidase-related6498e-068
AT4G01640.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: S locus F-box-related / SLF-related (TAIR:AT2G34280.1); Has 151 Blast hits to 146 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).5897e-061
AT1G11270.1 F-box family protein4902e-049

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  67%
 
101  33%

Unigene MembersMember information