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Information for unigene UN05500
| FASTA Sequence |
| Unigene ID: UN05500 | Length: 651 |
SSR | | GGGAGACAGAGAGAGAGAGAGACCACTTCGCTCCTCCGGTGATAGGTTTTTATTCCGTGTGTGACTGTTTGTTTGTAATTCACTCA
AAACAATGGGAGACTCAGAAAACGCGCAGCCACCTTCTAAAAAGAGAGGTGCTTTGAAGCAGCTCTCTCGTGACAATCCAGGTCTC
GATGATGATGATGATGATGTTGATACATCTGAATTGGAGAGTGGGACTTTCAAGAAAGCCAGTGATGAGGTTTTGGCTAGTAGGAG
AATCGTCAGAGTCAAGCGCAAAGAGCCTTCCTCTGCTCCACCACCATCCGCTGCAGCAACGACCAATCCCTTTGCTGGGATTCAAC
TGCTCCCTACTGCACATGCTTCAACCGCTAATCCAACTCTGGCTGAGTCTAAGTTGGCTCCTGCTGAAGCCGTAGTTGAAGACAAT
CAGAAGGAAACTGATACCGAAGAGGGCGGTGATGAAGTTGAGAGTAAGAAGAAGGTTGATGATGTCAAAGACTCTGCTGAGGAAGA
GACTAAAGATGATAATGAGCGTGGAAAGACATCTGATGACCAGACTACTCATGATGATGATGTTAAAGAATCTGCTGAGGAAGCGA
CAAAAGATGATAATGAGCGTGGAAAGACATCTGATGATGATGTAGACAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_564606 nucleoporin 50 protein [Arabidopsis thaliana] | 504 | 4e-049 |
| XP_002891695 Ran-binding protein 1 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 503 | 5e-049 |
| XP_002885120 Ran-binding protein 1 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 353 | 1e-031 |
| NP_566532 NUP50 protein [Arabidopsis thaliana] | 314 | 4e-027 |
| AAM61016 unknown [Arabidopsis thaliana] | 311 | 9e-027 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q75JC9 Uncharacterized protein DDB_G0271670 | 128 | 8e-007 |
| O94317 Uncharacterized serine-rich protein C215.13 | 120 | 6e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C829 At1g52380/F19K6_4 | 504 | 3e-049 |
| Q9LW88 Genomic DNA, chromosome 3, P1 clone: MSL1 | 314 | 3e-027 |
| Q8LG62 Putative uncharacterized protein | 311 | 7e-027 |
| B9SQB9 Ran-binding protein, putative | 301 | 9e-026 |
| B9GEK5 Predicted protein | 225 | 6e-017 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G52380.1 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein | 504 | 2e-051 |
| AT3G15970.1 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein | 314 | 2e-029 |
| AT5G55660.1 LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26630.2); Has 348612 Blast hits to 121147 proteins in 2910 species: Archae - 1231; Bacteria - 38190; Metazoa - 148268; Fungi - 42547; Plants - 15024; Viruses - 2447; Other Eukaryotes - 100905 (source: NCBI BLink). | 116 | 2e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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