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Information for unigene UN05571
| FASTA Sequence |
| Unigene ID: UN05571 | Length: 805 |
SSR | | GAGGTTCTAGGGTTTCTCTTTCTCTCTCTCCGCCGCGTTCTCCTCTCTCTCTCTCTCACACACAATCTCAGCTTCTCCTTTCCCTC
CTCCCAAAACTTCTACGTCTTTGCAGATATTCCCTTAAACAGATGAGTAGTGTATTCAGCGAAGAGATCCTAATCGATAAGCTCGC
GAAGCTCAACAGCACTCAACAGTCCATCGAAACGTTATCGCATTGGTGTATATTCAATCGGGTGAAAGCTGAATTGATCGTGACGA
CATGGGAGAAGCAGTTTCACAGCACGGAGATGGCTCAGAAAGTGCCTCTCTTGTATTTGGCTAATGATATTCTTCAGAACAGTAAG
CGTCAGGGCAACGAGTTCGTGGACGAGTTCTGGAATGTTCTTCCCAAGGCGGTCAAAGACATTGCTGTTTCTCAGGGTGATGATCG
TGGCAAAGGCGTTGTCTCCCGTCTGGTCAAGATATGGGAAGAAAGAAAAGTGTTTGGATCCCGTTCTATGAATCTTAGAGACGCTG
ATGCTTGGTGAAGATTGCCCTCTCCCACTTGATGTCACCAAGAAGCGATCCCGTGGATCCAAATCCTCTAAACGTGATTCAAAGTC
GTCCAGAACGAAACTATCAAGTGGAGGTGTGGCTGAGAAGATAGCATCAGCATATCATTTGGTTGTTGCTGAAAACTCAAATGAAG
AAGCTGAGATGAGTAAATGCAAGTCTGCTGTTAACGAATCAGAGATGGAGAAAGATGTTGAGAGCTTTCTCTACTACTGTGAAGAC
ACCCGAGAGAAATCACTGGCGAACACTGGAG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAZ66926 117M18_7 [Brassica rapa] | 618 | 4e-062 |
| XP_002873435 hypothetical protein ARALYDRAFT_487831 [Arabidopsis lyrata subsp. lyrata] | 590 | 6e-059 |
| NP_196568 ENTH/VHS family protein [Arabidopsis thaliana] | 570 | 1e-056 |
| XP_002864945 hypothetical protein ARALYDRAFT_496743 [Arabidopsis lyrata subsp. lyrata] | 527 | 1e-051 |
| NP_569007 ENTH/VHS family protein [Arabidopsis thaliana] | 526 | 2e-051 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q0P5J9 Regulation of nuclear pre-mRNA domain-containing protein 1A | 250 | 8e-021 |
| Q5ZM30 Regulation of nuclear pre-mRNA domain-containing protein 1A | 250 | 8e-021 |
| Q96P16 Regulation of nuclear pre-mRNA domain-containing protein 1A | 250 | 8e-021 |
| Q8VDS4 Regulation of nuclear pre-mRNA domain-containing protein 1A | 250 | 8e-021 |
| Q5R8Y3 Regulation of nuclear pre-mRNA domain-containing protein 1A | 250 | 8e-021 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q4AC18 117M18_7 | 618 | 3e-062 |
| Q8GUK8 At5g10060 | 570 | 9e-057 |
| Q9FJP7 Genomic DNA, chromosome 5, P1 clone:MQN23 | 526 | 1e-051 |
| B9SSM4 Putative uncharacterized protein | 500 | 1e-048 |
| B9HFQ1 Predicted protein | 498 | 2e-048 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G10060.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65180.1); Has 4531 Blast hits to 4161 proteins in 412 species: Archae - 14; Bacteria - 404; Metazoa - 1999; Fungi - 666; Plants - 262; Viruses - 36; Other Eukaryotes - 1150 (source: NCBI BLink). | 570 | 6e-059 |
| AT5G65180.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10060.1); Has 3523 Blast hits to 3241 proteins in 333 species: Archae - 25; Bacteria - 251; Metazoa - 1575; Fungi - 421; Plants - 142; Viruses - 17; Other Eukaryotes - 1092 (source: NCBI BLink). | 526 | 7e-054 |
| AT3G26990.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10060.1); Has 815 Blast hits to 806 proteins in 138 species: Archae - 0; Bacteria - 10; Metazoa - 490; Fungi - 159; Plants - 81; Viruses - 1; Other Eukaryotes - 74 (source: NCBI BLink). | 393 | 2e-038 |
| AT5G65180.2 unknown protein | 295 | 4e-027 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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