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Information for unigene UN05599
| FASTA Sequence |
| Unigene ID: UN05599 | Length: 1503 |
SSR | | GGGAGTGTATCCTCTTGCTGTCATTCTCTCACCAACAAGGGAATTGGCATGCCAGATACATGATGAAGCCAGAAAGTTCTCCTATC
AAACTGGTGTGAAAGTTGTGGTTGCTTATGCAGGAACACCAGTCAACCAACAGATACGGGAGCTTGAAAGAGGAGTTGATATTCTT
GTTGCAACTCCTGGGAGATTAAATGATTTGCTTGAGAGAGGTAGAGTCTCACTACAGATGGTAAAATACTTAGCACTCGATGAGGC
TGACAGGATGCTGGACATGGGTTTTGAACCGCAAATCAGGAAGATCGTTCAGCAGATGGATATGCCTCCTCCTGGTGTCCGGCAGA
CAATGCTATTCAGTGCTACATTTCCTAGAGAGATACAGAGACTTGCATCTGATTTTCTTTCTAATTACGTATTTCTGGCTGTTGGG
AGAGTGGGTTCAAGTACGGATTTGATTGTCCAAAGGGTAGAGTTTGTCCACGACTCTGACAAAAGAAGCCATCTGATGGACCTTCT
TCATGCTCAGAGGGAGAATGGTAACCAAGGAAAGCCAGCTTTGACTCTAGTATTTGTGGAGACAAAGAAGGGGGCTGACTCTTTGG
AGAATTGGTTGTGCATGAACGGGTTCCCAGCAACGACCATCCACGGTGATAGGTCACAGCAGGAAAGAGAAGTGGCACTGAGATCA
TTCAAGACTGGGCGGACACCTATTTTGGTTGTAACTGATGTGGCAGCACGTGGTCTTGACATTCCACACGTGGCTCATGTGGTCAA
CTTTGATCTACCAAACGACATCGATGACTATGTCCACCGTATCGGACGAACAGGGCGTGCAGGCAATTCAGGACTAGCAACTGCTT
TCTTCAATGACAACAACACATCAATGGCCAAGCCACTCGCTGAGCTTATGCAAGAAGCAAACCAGGAGGTCCCTGACTGGCTGAGT
CGGTATGCATCTCGTGCTTCATTTGGAGGTGGAAAGAACCGACGGTCTGGTGGGCGGTTTGGTGGCCGTGACTTCAGGAGAGAATC
GTTTGGCCAAGGAGGAGGCGGTGGTGGTGGCTACTATGGTGGTGGTGGTGGTGGATATGGAGCCGTTCCCGGTGGTGGATATGGAG
CAATGCCTGGTGGATATGGAAACGTACCAGGTGGTGGATATGGGGCCGTTCCTGGTGGTTATGTACCATACGGTAGAGGCGGTGGT
GCTTACTACGGTGGAGGATATGGAGCCGTTCCTAACCAAGGCTACGGCCCTGGAGTGGCAAGTGCTTGGGACTAAGTTGTTGACTC
CAATTCTTCAAAAACGAACTATATCCTCTCTTATCTCTATTGTTTTACTAATAGAGAGCATCGTATGTGTATGTTTGCTCTCTAGA
TGGTTATTTATGTAGACACGAGTGAGTCTTCACTTGTGCATGTGAAAGAAGCCAAAAAAACTCCTAGTCGACTATTATTTTCACGA
GTTCTGTAGTCCTTGGATCAATATAAAACATAACTTTTATC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002876468 hypothetical protein ARALYDRAFT_486308 [Arabidopsis lyrata subsp. lyrata] | 2107 | 2e-234 |
| NP_191416 DEAD-box ATP-dependent RNA helicase 52 [Arabidopsis thaliana] | 2106 | 3e-234 |
| XP_002879990 hypothetical protein ARALYDRAFT_483345 [Arabidopsis lyrata subsp. lyrata] | 1759 | 5e-194 |
| NP_181780 DEAD-box ATP-dependent RNA helicase 37 [Arabidopsis thaliana] | 1745 | 2e-192 |
| AAO42134 putative DEAD/DEAH box RNA helicase [Arabidopsis thaliana] | 1742 | 4e-192 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9M2F9 DEAD-box ATP-dependent RNA helicase 52 | 2106 | 1e-235 |
| Q84W89 DEAD-box ATP-dependent RNA helicase 37 | 1745 | 8e-194 |
| Q8LA13 DEAD-box ATP-dependent RNA helicase 11 | 1657 | 1e-183 |
| Q75HJ0 DEAD-box ATP-dependent RNA helicase 37 | 1595 | 2e-176 |
| Q6Z4K6 DEAD-box ATP-dependent RNA helicase 52B | 1592 | 5e-176 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9GY92 Predicted protein | 1648 | 2e-181 |
| B9SYU7 Dead box ATP-dependent RNA helicase, putative | 1621 | 3e-178 |
| B9F6K1 Putative uncharacterized protein | 1595 | 3e-175 |
| B8B879 Putative uncharacterized protein | 1592 | 8e-175 |
| B9FW25 Putative uncharacterized protein | 1592 | 8e-175 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G58570.1 DEAD box RNA helicase, putative | 2107 | 8e-237 |
| AT2G42520.1 DEAD box RNA helicase, putative | 1745 | 7e-195 |
| AT3G58510.1 DEAD box RNA helicase, putative (RH11) | 1657 | 1e-184 |
| AT3G58510.2 DEAD box RNA helicase, putative (RH11) | 1657 | 1e-184 |
| AT3G58510.3 DEAD box RNA helicase, putative (RH11) | 1657 | 1e-184 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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