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Information for unigene UN05615
| FASTA Sequence |
| Unigene ID: UN05615 | Length: 1213 |
| SNP | GGACAGTGCCCTGTAGAAAATATGTCTTCAGCTTATTGTCCCTCCCTCCCCGTGGCGGTTTCCGTCGCATCCACCGTTTCCTCCTC
CCCTACCTCTAACTCGTTATTCTCCTCCCACTCAAACTCCAAACTCTTCTATCGCATCACGCCAAAACCCTTCAAACTCGTCGCCA
AATGCCCTACTCCTCTGTTCCTCCATCCAAACACACGTCGCCACCGCCTCCTCTGCGCCGCCGAAGACGAAATCCCGCCGTCATCC
GAAGAAGAAGACTACGAAGAAGAAAACGAAGAAGGAGAAGAAGGGGAAGAAGACGCAGATGGGACACAGACTACTACGCAAGCGAG
CGTTGAGGAAGGGAGGCTGTACGTTGGGAACTTGCCTTACACAATCACTTCTTCTGAGCTCTCTCAACTCTTTGGAGAAGCTGGTA
ACGTCGTCGATGTTCAGATTGTGTACGATAAAGTCACTGACAGAAGCAGAGGGTTTGGGTTCGTGACCATGGGAACCATTGAAGAA
GCTAAGGAAGCGATTCAGATGTTCAACAGCTCCCAAATCGGTGGTCGGACGGTGAAAGTGAACTTTCCGGAGGTGCCTAGAGGCGG
AGAGAGAGAAGTGATGAGGACTAAGATTCGTGATAGTAACGGGAGTTATGTTGACAGTCCTCACAAGATCTATGCGGGAAACCTTG
GTTGGAATCTAACCTCGCAGGGTCTTAAAGATGCGTTTGGAGATCAGCCTGGTGTGCTTGGTGCTAAAGTTATCTACGAAAGGAAC
AGTGGGAGGTCTAGGGGGTTTGGTTTCGTGTCTTTTGAGTCGGAAGAAGATCTTCAGTCTGGTCTGAGTGCTATGAATGGTGTGGA
AGTTGAAGGACGAGCGCTGAGGCTGAACTTGGCTTCGGAGAGAGCTACTACGGAGCCTCGGTCTTCTGTTGCAGAAGGAGTGACTG
AAGAGGGTAGTGTAGGGAGCAGTGAGGTGCTTTCGAACATTAGTACATGAAGCGGCAAAAGCAAAGTAGATTCTTCCGAGGGCTAG
AAAATGAAAGTTTTTATGAGTTATGACTTTATGTTGTTGTACTCTACTGAGGCTAAAGAAGAAGATGATATATGAGATAAACAACA
GGAGATTAGCTGTAATCTTATTAAGAAATGCATATTCCACCACTAAATGGTGTAATATAAGATCTTTCTATCCCAGAGAAGTGCAT
ATTTTTGGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_190806 chloroplast RNA-binding protein 33 [Arabidopsis thaliana] | 1250 | 4e-135 |
| XP_002876141 RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata] | 1242 | 3e-134 |
| AAL32533 ubiquitin / ribosomal protein CEP52 [Arabidopsis thaliana] | 1238 | 9e-134 |
| BAA06523 RNA-binding protein cp33 [Arabidopsis thaliana] | 1219 | 1e-131 |
| XP_002264127 PREDICTED: hypothetical protein [Vitis vinifera] | 786 | 2e-081 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P19684 33 kDa ribonucleoprotein, chloroplastic | 739 | 3e-077 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 423 | 1e-040 |
| P49313 30 kDa ribonucleoprotein, chloroplastic | 411 | 3e-039 |
| P82277 30S ribosomal protein 2, chloroplastic | 397 | 1e-037 |
| P19682 28 kDa ribonucleoprotein, chloroplastic | 394 | 3e-037 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q39061 AT3g52380/F22O6_240 | 1250 | 3e-135 |
| Q8W4N7 Ubiquitin / ribosomal protein CEP52 | 1238 | 6e-134 |
| Q39062 RNA-binding protein cp33 (Fragment) | 1219 | 1e-131 |
| A5BE87 Putative uncharacterized protein | 784 | 3e-081 |
| B9IIJ4 Predicted protein | 747 | 5e-077 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G52380.1 CP33; RNA binding | 1251 | 1e-137 |
| AT3G52150.1 RNA recognition motif (RRM)-containing protein | 365 | 6e-035 |
| AT3G52150.2 RNA recognition motif (RRM)-containing protein | 365 | 6e-035 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 242 | 1e-020 |
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 230 | 3e-019 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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