 |
Information for unigene UN05622
| FASTA Sequence |
| Unigene ID: UN05622 | Length: 1579 |
| SNP | GGGGATCCTTAAGTCTTCTTAATAGCCTCCTCTCTCTCTAGTTCTCTCTATATCTGAAAAAGAGTATCGCTTATAGAACGATATGC
GGAATAACGAAACGTCAGCGAGTGAGATTGCTGCGGCGAAGCAGAAGAAAGTCGACGATTGGTTACCGATCACATCCTCAAGAAAC
GCCAAGTGGTGGTACTCTGCATTTCACAATGTCACTGCCATGGTTGGTGCTGGTGTTCTAAGCTTGCCCTACGCCATGTCCAATCT
CGGATGGGGACCTGGCGTGACGTTGATGATAATGTCATGGCTCATAACTTTGTACACACTGTGGCAAATGGTGGAGATGCACGAGA
TGGTACCTGGGAAGAGGTTTGATAGATATCACGAGCTAGGCCAAGAAGCTTTTGGCGAAAAGCTTGGCCTTTGGATCATTGTGCCT
CAACAACTAATCGTGGAGGTCGGTGTAGACATTGTTTATATGGTTACCGGAGGTCAATCTCTCAAGAAAGTCCATGAACTCCTCTG
CTCTGATTGCAAAGACATCAAAACTACGTATTGGATCATGATCTTTGCTTCTATCCACTTCGTTATCTCTCACCTACCAAACTTTA
ACTCCATCTCCGTCATCTCACTCGCAGCTGCCGTTATGTCCCTATCTTACTCAACTATTGCATGGACTGCATCAGTGCACAAAGGA
GTTCGTCCAGATGTAGACTACTCGCCTAGAGCCTCGACACGCCTGGAAATGTATTCAACTTCTTGAACGCGTTGGGAGATGTGGCT
TTTGCATACGCAGGTCACAACGTTGTGCTGGAGATTCAAGCCACGATTCCTTCGACACCGGAGATACCATCCAAGGCTCCAATGTG
GAGAGGAGTCCTTGTAGCCTACATCATAGTCGCCATTTGCTACTTCCCTGTAGCGTTCCTCGGCTATTGGATCTTTGGAAACAGCG
TTGACGACAACGTTCTAATGACTTTGGAGAAGCCTGTATGGCTTATTGCAATAGCTAACTCGTTTGTGGTGGTCCATGTCATTGGA
AGCTATCAGATCTTTGCAATGCCAGTGTTTGACATGCTTGAAACCGTTTTGGTCAAGAAGATGAATTTCAATCCTTCCTTCAAACT
TCGCTTCATCACTCGTAGTCTTTATGTTGCTTTCACTATGTTCATCGCGATATGTATCCCGTTCTTTGGTGGACTACTCGGCTTCT
TTGGAGGATTTGCATTCGCCCCAACAACTTACTACCTTCCATGCATTATTTGGCTCATTCTCAAGAAACCTAAGAAGTTCAGTCTA
TCCTGGATAAGTAACTGGTTCTGCATTATAGTAGGAGTTATTTTGACGGTCATAGCACCCATTGGTGGCCTCAGAACCATCATTGT
CAACGCAAGCACCTACAAGTTCTTCTCTTAGATTTTTTCTTCTTGTACCACAAAAAAAAAGTAAAGTAGATATAAGAAAATAAGCC
ACGGCCAGTCTCGTTTTCTATTACTGTCCATTTTGTTACTTTTAAGATTTTAGTATAGTTTAAGACTCGTAAGTTATGTATCTGCT
GCTTTTATATGAAAAACTCCATATTCTAGTT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_564217 lysine histidine transporter 2 [Arabidopsis thaliana] | 1100 | 1e-117 |
| XP_002890710 hypothetical protein ARALYDRAFT_890234 [Arabidopsis lyrata subsp. lyrata] | 1093 | 9e-117 |
| XP_002888613 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1050 | 8e-112 |
| NP_176932 Lysine histidine transporter-like 2 [Arabidopsis thaliana] | 1049 | 1e-111 |
| ABK28455 unknown [Arabidopsis thaliana] | 1049 | 1e-111 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LRB5 Lysine histidine transporter 2 | 1100 | 6e-119 |
| Q9SR44 Lysine histidine transporter-like 2 | 1049 | 5e-113 |
| Q9FKS8 Lysine histidine transporter 1 | 924 | 1e-098 |
| Q9C733 Lysine histidine transporter-like 1 | 881 | 1e-093 |
| Q9C6M2 Lysine histidine transporter-like 6 | 789 | 6e-083 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RMN0 Amino acid transporter, putative | 1010 | 2e-107 |
| B6TF11 AATL2 | 976 | 2e-103 |
| C5YU61 Putative uncharacterized protein Sb08g009800 | 975 | 3e-103 |
| A2ZJE5 Putative uncharacterized protein | 961 | 1e-101 |
| B9GJB5 Lysine/histidine transporter | 961 | 1e-101 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G24400.1 LHT2 (LYSINE HISTIDINE TRANSPORTER 2); acidic amino acid transmembrane transporter/ amino acid transmembrane transporter/ neutral amino acid transmembrane transporter | 1101 | 4e-120 |
| AT1G67640.1 lysine and histidine specific transporter, putative | 1050 | 3e-114 |
| AT5G40780.1 LHT1; amino acid transmembrane transporter | 925 | 1e-099 |
| AT5G40780.2 LHT1; amino acid transmembrane transporter | 925 | 1e-099 |
| AT1G48640.1 lysine and histidine specific transporter, putative | 882 | 9e-095 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
