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Information for unigene UN05644
| FASTA Sequence |
| Unigene ID: UN05644 | Length: 1062 |
SSR | | GGATCACATAGTAATTGTCAATTTCATAAAGTACATGACAAATACACATTAGTTGACCCTTGAAGTGGTTGCCGTGAGATGACTTA
CTTTCTGATAAAATTTGAGAAGTGATGAGGTAAACAATAGCCTATGGCGAGTTCAAAATTAGAAGATAAGAGAAGAAAGTAGAAGA
GTCTTTGCTAGTGTACCTAAGATTCTATTTATCTGACATGTAAAGTTGAAGAATCAAATCTTGATTGAGCATTAGAACTTCATTCT
CTTAGCAGGACCTTGATCGATAATAGGATCAATTTGAGGCTGCTGTGACTCTCCTCCCTGTGTTCCAAGCTCTTCTTCCTTTTCTC
CTAATGCTTCCTGGCTAACATAGCCTTCAGGGAACGGTGGTGGTGGAGGTGCTGGGGGTAACTTGCTATATAACGACTTAAGAATC
AAATCAACTCGCTTCACTTCCTTGAGATCAACCGTCTCACTAGCAGGCTTTGTCTCAGAAGCCTCATTCTGGCTTTTAGCATCAAC
CTGCTTAATGGTCTCCAACTTGGATGCAGCAACAGAGAAAGCGTTGGAAATGTGATAAACAGCCCGACCGACACGAGCTGCAAAGA
CACTACAAAGCTGAGGAGCTTGGTAGATAGTACCGTCCAAGATATAATACGTTAGCATAGGTGTGACTTTCTCGGGACCATCTCTC
TTCTGCTTACGAAACACGAACAGGTTCGGCTCCGTAGCATCACTGATCACATACTCTAACCCTGTCATCTTCGAGAGTTGAGAGTG
ATCGAGAGGATGAACGGATCTCCGGCGAAGAACCTCGTTGTTGCAGGTGATGTCGTAGAAAGGAGACAAAGCGAAGTAGTCGAAGA
CGTAGTTACGGTCTAGAGGGTACGAGTTGATCCATAGCTGATCCCTGAAGCATATACCAGTCATATCCGTGCCTGGAGGCTGAAGT
GGAGGAGCAATCTGCTCCCCCGCATTGCCGCCGTTGAAGGTGTCGGCCGGAGCCGAGGACGGAAGAGATGCGTCCATGGAAGTGAG
AGAGTCTTGGCAGGGAAGAGAGAGAGAGAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002883299 hypothetical protein ARALYDRAFT_479655 [Arabidopsis lyrata subsp. lyrata] | 1140 | 2e-122 |
| NP_188772 RNA polymerase transcriptional regulation mediator-like protein [Arabidopsis thaliana] | 1129 | 3e-121 |
| XP_002331927 predicted protein [Populus trichocarpa] | 901 | 9e-095 |
| XP_002282496 PREDICTED: hypothetical protein [Vitis vinifera] | 881 | 2e-092 |
| XP_002515912 RNA polymerase II mediator complex subunit, putative [Ricinus communis] | 878 | 4e-092 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q54PN3 Putative mediator of RNA polymerase II transcription subunit 6 | 308 | 2e-027 |
| O75586 Mediator of RNA polymerase II transcription subunit 6 | 259 | 1e-021 |
| Q921D4 Mediator of RNA polymerase II transcription subunit 6 | 259 | 1e-021 |
| Q5RD94 Mediator of RNA polymerase II transcription subunit 6 | 259 | 1e-021 |
| Q3SZY9 Mediator of RNA polymerase II transcription subunit 6 | 258 | 1e-021 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LIG1 Putative uncharacterized protein At3g21350 | 1129 | 2e-121 |
| B9N9I3 Predicted protein (Fragment) | 901 | 6e-095 |
| B9RQ93 RNA polymerase II mediator complex subunit, putative | 878 | 3e-092 |
| A5AE97 Putative uncharacterized protein | 869 | 3e-091 |
| B8B401 Putative uncharacterized protein | 826 | 3e-086 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G21350.1 RNA polymerase transcriptional regulation mediator-related | 1141 | 5e-125 |
| AT3G21350.2 RNA polymerase transcriptional regulation mediator-related | 754 | 4e-080 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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