 |
Information for unigene UN05660
| FASTA Sequence |
| Unigene ID: UN05660 | Length: 868 |
| SNP | GGAAGTTTGTTATTCCTTCCCCCGATTCCCCGCATTTAAACGAGGTGAAAACCATAACCGATTCCGATCGAGAAGTTTTTTTTCTC
TTGAGATCGAATCGGCATGACGAATCCCGACAAACAGAATCCGGTCGAAGCTCCCGACGTCGAGGCAGCGCCGGCGGCGAAGACGG
AGACGACGCAGGGATCCGGAACGTCGTCGTTTTCTGCGATTACTCAGAGATGGAAGAGGGAGGATTTGGTAAAGAAAGCGTCTCCG
ATCGCGAGAGGGTTGTGTCTTCTGTTCTCTCTCCTCGCTTTCATCATCATGGTCTCTAACAAACATGGATACGGTAGAAACTTCGA
CGACTACGAAGAGTACAAATATGTTTTAGCTATTGCGATCATCTCGACGGTGTACACAGCGTGGCAAACGTTTGTACATCTCTCGA
AGAGAGAGTTCTTTGATCGCCGGACTTCCATGTTGGTCGATTTTTCCGGTGATCAGATTGTGGCTTATCTTCTCATATCAGCTGCA
TCGTCTGCGATACCATTGACCAACAGATTCAGAGAAGGTCAAGATAACATATTCACTGATTCTGCTGCTTCAGCAATCAGCATGAC
TGTCTTCGCCTTCGTCTCTCTAGCTCTCTCTGGTCTCTTCTCCGGTTACAAACTCTCCACTCATTCTTTTATCTGAATCTGGTTAT
AAACCTAATCATGTGCTTTTCAATCGTTTATTTTATACCGTGTTGATGTTTGAGAGACACGTGTAAAATGTCATTCATTCTTTAAC
TTCCTGTTATGTTGGATCTGTGACTGTTTGATGATACATTGTACGAAGTGAAAACATTGATTGGCTTAATATCATTTTTCTATTTC
TATGGTGC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002881599 hypothetical protein ARALYDRAFT_321547 [Arabidopsis lyrata subsp. lyrata] | 791 | 4e-082 |
| NP_565891 uncharacterized protein [Arabidopsis thaliana] | 775 | 3e-080 |
| AAM62879 unknown [Arabidopsis thaliana] | 772 | 6e-080 |
| XP_002526699 conserved hypothetical protein [Ricinus communis] | 476 | 1e-045 |
| XP_002264973 PREDICTED: hypothetical protein [Vitis vinifera] | 473 | 3e-045 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8LE26 UPF0497 membrane protein At2g38480 | 791 | 2e-083 |
| Q5W6M3 UPF0497 membrane protein Os05g0344400 | 425 | 5e-041 |
| B9F6Z0 UPF0497 membrane protein Os03g0817100 | 355 | 6e-033 |
| Q10MR5 UPF0497 membrane protein Os03g0298300 | 352 | 1e-032 |
| Q84NQ7 UPF0497 membrane protein Os07g0692200 | 255 | 2e-021 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SL30 Putative uncharacterized protein | 476 | 9e-046 |
| A2Y3F2 Putative uncharacterized protein | 425 | 7e-040 |
| C5YW81 Putative uncharacterized protein Sb09g015920 | 424 | 9e-040 |
| B9IGK5 Predicted protein | 409 | 5e-038 |
| C6T472 Putative uncharacterized protein | 387 | 2e-035 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G38480.1 integral membrane protein, putative | 792 | 1e-084 |
| AT2G36330.1 FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: integral membrane protein, putative (TAIR:AT5G62820.1); Has 132 Blast hits to 130 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 1; Plants - 124; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | 209 | 5e-017 |
| AT4G11655.1 transmembrane protein, putative | 155 | 8e-011 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
