Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN05772

FASTA Sequence
Unigene ID: UN05772Length: 1118 SSR 
GGAGAAAAAAAACATTTACTTCTTATTAATTACTCTATCCATGGGCTGAGTTACACACATGCAAAGGCCTCTTTACTTTGCCTTTT
CATCTGGATGTTACACTATCCTCCAGACCAAATCTATACAAAGATGTAACCCAACACAAACTCACTCAACATTAAGCAACTTTCAT
CTACCAACACAAATGTACATTCTTTGTCTAAGTTTCCTCACAAGAGCAAGACAAAGCTAGTGAGGAGAAGAACTCTAAAACAGTAC
AAGACACAGAGCCACACAACATATTAAAAACAAGAAGATTCTTCCCAATGATTTATCGGCTTTCATTATCTGTCTTCTCATCCTCG
GGCAGCTAGTCTCTGCCAGATTGTAAGTGTCCGGATACGTGAACCTATCCATAACTCTGGTTCCAAACAGCCTCGTCGCTACCATT
TCTCCAACCATCACCATCATTGGATCCATAACAGGAGAGTACGACAAACTGTTAGAACTCATCACCCCTGAAACAGGGTAGTAACC
ATCATGCCGGTTATTGAAATGAACCCGTTGAGATAACCGAACATCGGTACTTGAGTTCGCCCTCTCAAGCTTGTAAACAGGTCTTC
TCGGCACAGCACAGCTTGTATCTTTGTCCTGACTATTGCCACCGCCTCGGCCATACAAGGGAACCAAAGTAGAGTGAGAGACTTTG
GATTTACAAACAGGACACTGTTTATTATGTCTTTGGTGGTGTTCATCGGTGGTCTGTACATGAAGCCATTTGTGGATGCAGGGCCA
GCAAAAGAGGTGGCCACAGAGGGTAACAACGGGTTCTTGCACTGAGTCTAGGCAAATGTTGCAGTCGAAGCTGGAATCGCCGTTGG
TATCATCAGAAGGAAGAGAGGCTGTGACTAGGTCTGGCTTGGTGTTGTTGAAAGAAAATGCACCTTCTCCATAGAGTTCTCCAGAA
GCATCTTCAAAGGATTGGTCCATGGCCATTTTTCAAATTTCAGAGAATCGGCGGCGTTTGAGGGGAAACCCTAAGTACTGTATCGA
TGAAGAAATATTAGATTGAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAGAGGGAGAGAGGGGTTTTGGAGATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_192260 E3 ubiquitin-protein ligase RMA1 [Arabidopsis thaliana]9458e-100
XP_002872772 hypothetical protein ARALYDRAFT_911843 [Arabidopsis lyrata subsp. lyrata]8938e-094
ACU19414 unknown [Glycine max]4493e-042
XP_002869561 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]4044e-037
NP_194477 E3 ubiquitin-protein ligase RMA3 [Arabidopsis thaliana]4027e-037

Swiss-Prot top hits (Blast detail)Scoree value
O64425 E3 ubiquitin-protein ligase RMA19453e-101
Q8GUK7 E3 ubiquitin-protein ligase RMA34023e-038
P93030 E3 ubiquitin-protein ligase RMA22922e-025
Q6R567 E3 ubiquitin-protein ligase RMA1H12841e-024
Q5ZIR9 RING finger protein 1852528e-021

TrEMBL top hits (Blast detail)Scoree value
C6T8R2 Putative uncharacterized protein4761e-045
C6TC62 Putative uncharacterized protein4492e-042
B9H2V8 Predicted protein4152e-038
C6TBF7 Putative uncharacterized protein3183e-027
C6TDV9 Putative uncharacterized protein3148e-027

Arabidopsis top hits (Blast detail)Scoree value
AT4G03510.1 RMA1; protein binding / ubiquitin-protein ligase/ zinc ion binding9462e-102
AT4G03510.2 RMA1; protein binding / ubiquitin-protein ligase/ zinc ion binding9462e-102
AT4G27470.1 zinc finger (C3HC4-type RING finger) family protein4032e-039
AT4G28270.1 zinc finger (C3HC4-type RING finger) family protein2922e-026
AT1G19310.1 zinc finger (C3HC4-type RING finger) family protein2742e-024

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  14%
 
62  29%
 
84  57%

Unigene MembersMember information