Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN05797

FASTA Sequence
Unigene ID: UN05797Length: 1358 SSR 
GCAAAAGCAAACTATGTTTTCAATGTATAATATATAATGAAAAGACATTGCATAAAACCATACTTCAGCGTACAATGAGCGACTCG
AGGAAGCTCAGAAAATGACATTTACATTAAAAACACCAAACAAATCCTACGGCTCTCGGGGGATTTCAGCAAAACCTTTCCCTTTG
CATCGGTCTGGTTCTGACCCGAGAGATAGCACCGAGACAAGTGGCTTTTTAACGCGGATGGTTTCCGCTTGATCTCGGACGACCAA
ACCTTCGTCTTCTTCTAGGAACATGATTCGAACCATCACCTGTTTCGTTCTGTAAACGCAACCCTTCACCATCATCATCATCATCA
TTGTCTTCATCTTGTAGACCCAATAGATTCTCTCCCCAAAGATAACGCCTATCTGAAGAAGAACGGCGATGAGTGTTCCTCCAAGC
CCTCGACCTGTGAGATCTTGATCCACCACCACTGCCACCACCACTACCACTAGACCCTCCGTTATTTTCAAGAGACCCAATCATCT
GAAACAACACGAAAGTAGTCCAAATGTCGCTGTTGTTGTTGCTGTTGCCGCCTCCATTTCCTGCTTCCCTCTCACCTGGGAACCTA
TCTCCGTTTTCGATAACGTAGTCTCCTACAACAACAGCACCGGGCATGGCAGAGCGTATTGCACTGACTATATCTCCATACTCCCT
CTGGTTCTCGAGGCGTCTCCAAGCTCTCTCTCTCGTTGGATCAGTGTCCGAAGGACGAGACGTTGGGTGTATCCTTCTTGCATGTC
GGCGCAGATCCTGGTAGTTACCCGTGAATGAGCAAGACTCTCGTGAGCAGCTTCGGCTCTTCATGTCGAGATAGCTTCTCACTTCT
TCTACCACCTTGAATCCTAAAACAGTACCACGGCAAAGAGGACATTTCAAATTAGCGGTTTCCTCTGCTTGTTCCTCTTCCCTAAC
AGCGACTTGGTTGATGTTTGGCCTTGAGGCAGAGTTTGGGTCGGGATTGGGATTGGGATTGGGATCAGTTGGGGGTTCGGAGTGGA
GTTTCTTGAACCTGTCGAGGCAATTGGAGTGACGGTAACTGGTGTCACAGATGTAAGACCTGCAACCTTTGTCGTGAGAGGTGCAG
AGGAGGAGAACAGCATTGTGAGGGTGATCCATGCAAACAGGGCATGAGACCTCATCCAGTACTTTGTGAAGAGCGTGAGGATCTGA
CTCTGGACTTAATTTTCGCTTTACACCAGCCATCTTTTTGCTAAACACTGTGTATAGCGAAAGAGATCAACCAATCTTTATTAGGA
GGCTGTTGAAAATCTACTTTGTTACTATTTGAGGGCTTTAACTTGAAGATCACTTTTTTTAAAATCGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_189118 uncharacterized protein [Arabidopsis thaliana]9225e-097
BAH56910 AT3G24740 [Arabidopsis thaliana]9225e-097
CBI37270 unnamed protein product [Vitis vinifera]7343e-075
XP_002883554 hypothetical protein ARALYDRAFT_479993 [Arabidopsis lyrata subsp. lyrata]7092e-072
XP_002521120 conserved hypothetical protein [Ricinus communis]6644e-067

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
C0Z2I1 AT3G24740 protein9223e-097
Q9LRY5 AT3g24740/K7P8_39223e-097
B9S551 Putative uncharacterized protein6643e-067
A9S773 Predicted protein6275e-063
Q2Z1Y7 Pm27 protein5542e-054

Arabidopsis top hits (Blast detail)Scoree value
AT3G24740.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G25910.1); Has 135 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).9921e-107
AT3G24740.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G25910.1); Has 135 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).9284e-100
AT4G31410.1 unknown protein3191e-029
AT4G31410.2 unknown protein3191e-029
AT1G68140.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G08460.2); Has 145 Blast hits to 136 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3012e-027

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  100%

Unigene MembersMember information