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Information for unigene UN05812

FASTA Sequence
Unigene ID: UN05812Length: 1184 SSR 
AGGCAAAGATGGGAGTATTATTAGTTTTAGGCTTTTAATGCATAAAGGAAGGATAATCAAGTGGAGAGAAAAAGCTAAGCTACACT
TACACATACTGTACATGAAGAAGGATTCAAAATTCCATAATTGAGAGACTAATCAGTGCACATTAGACTCTAATTACACAAATAAA
ACCGTATCCGAAACAATACACAGGCTTACATAAAAAACAAAGCAAAAAATGTAGGAGTATTGTTTTGTCATCTCCGTGGCACATTC
AAAGGTTTTATTCTCTCTGGTCTCATCTCCTCTGTTCTTGGAAGGTTTTTATTTAGACAAGAAGGGGTCACCACCATACATTGAGT
TAAAACTCGCTTTCAGTCTCGTGAACGTACAAACCAGAGGAAAGACAACAAGCAGCTACTCTTTTTATCCCTTATGCTGCTTAGGC
TCCTGTTGCTATTGCTGCTACCGCTCCTCTTTGTGCTCTCGCTACCCCTCGACTCAGGCAATCTATTCCACCACTCTCTATCCTCT
GTTTTCAAAGACTCATCAGAGATCGAAGGTCTCGGCGAAACGTGAGAATCTTTAACAGAATCCTTCTCCTTTCTCTTCCTCTTCTT
CTTCTTCTTTTTCGCCGTATCTTTCTTAGATCCAAAGCTAAACGGAAACATCATTTTGAGAAGAAACCCACCGTTGTTTACACTCG
GATCAGCCCGTTTACCGCTCTTCGTCTTCCTCACAACCTTACCTGTTCTCTGAGTCAACTCATCGAAGATCTTCCTATCGTTATTC
TCTTCGTTTCCCCTCGCTTCGACAAGATCCCTCAAGGAAAGCTCGTAACACGACTCTGGCATCTTACTGACCATCTCCATAAGCTC
CCGTTGTCCACGAGCGATAGCCTGAGCCTTTGAATCCGGAGAAAGGCTAGAGTAGCGTTCCGGCCGGTGAAGAGGACTCCTCGGTG
GACTTGTACTCCACAGAGTAGGAGAACAGACGCCGGAATCTGAGTGATCATTGGGAACAGTTGGGAAACTCAAGTGGTGACTGTAG
GTTTCAGCTGAAGGATCTAACATATCAATCTTGCAAGAACGAGAGAGAGAGAGAGAAGAGTGGATCCGTAAGTGAGTTATGTTCGG
AAACAACTCGTTGGTAGTTGCAAAAAAAGATGTTTATCTTAGCTTGACCCGTTCATGGGAATCTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002893161 hypothetical protein ARALYDRAFT_472375 [Arabidopsis lyrata subsp. lyrata]7532e-077
NP_173561 embryo defective 2170 [Arabidopsis thaliana]7182e-073
XP_002862501 hypothetical protein ARALYDRAFT_497423 [Arabidopsis lyrata subsp. lyrata]5622e-055
NP_177824 uncharacterized protein [Arabidopsis thaliana]5542e-054
NP_001154473 uncharacterized protein [Arabidopsis thaliana]5542e-054

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q52K83 At1g213907181e-073
O49284 At1g769805576e-055
B9GTQ4 Predicted protein4528e-043
B9H7L2 Predicted protein4402e-041
A5C140 Putative uncharacterized protein3811e-034

Arabidopsis top hits (Blast detail)Scoree value
AT1G21390.1 emb2170 (embryo defective 2170)7187e-076
AT1G76980.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: emb2170 (embryo defective 2170) (TAIR:AT1G21390.1).6012e-062
AT1G76980.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: emb2170 (embryo defective 2170) (TAIR:AT1G21390.1); Has 33 Blast hits to 33 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 7; Plants - 14; Viruses - 2; Other Eukaryotes - 4 (source: NCBI BLink).5573e-057

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  100%

Unigene MembersMember information