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Information for unigene UN05897

FASTA Sequence
Unigene ID: UN05897Length: 1471 SSR 
GGGGTTTGGGGTATGGTGATTCTGACTTAGGGTTTGGAGGTGTACCCTGTTCTTACTATGCTAGAGGCTTCTGTAAAAACGGAAGT
AACTGCAGATTCGTTCACAGTGAGGGAGGAGCTGAGTTAGTTGGCTCTCCAAACAGAATCGAGCTTCTTAGGTCTAACTCGGTACC
TCCAAGACTTGCTCACCACTTCATGACTCGCTCTTCTTTGCCTTCCTTCTCTCCAAAAGGAGTTAACTTGCAGAGCAGCGACGCTC
AAAGAGCTGCTGCTGCTGCTTTGATGATGGGAGATGAACTGCAGAAGCTTGGGAGATGGAGGCCTGAGAGGATTGATCTCTCTGCT
ATGTCTTGTCCAGCTTCGAGACAGATCTATCTTACATTTCCTGCCGACAGTAGGTTCAGGGAGGAAGATGTGTCCAACTACTTCAG
TACATTTGGACCAGTTCAAGATGTGAGGATACCATATCAGCAAAAGAGGATGTTTGGGTTTGTGACTTTTTTGTACCCTGAGACTG
TCAAGAGCATTCTTGCCAAAGGGAACCCTCACTTTGTGTGTGATTCAAGGGTTCTTGTTAAGCCTTACAAGGAGAAAGGCAAAGTC
ACTGATAAATACAGAACTAACCAGCCAACAGAGCTAGAATTGTCCCCAACAGACCTTGCTTCTAGCCCCAGGGATGCTATAGGAGG
GAGAGGGTTTTATAACACCCCACAAGATGTTTTATGGGAGAGTAAGTTTGAAGAAGAGATTCTTGAGCTTCAGAGCAGAAGGCTTA
TGAACATGCAGCTTCTTGACGTCAAGAAGCATTTCCAAGTCAATTCCCCTACACACATTCATTCCCCAAACCCTTTTAGCCAAGCA
CTTGTGTCTCCACGCCCATTGCCGGTTAAAGCAGGAGAATATGTAGGAAGAGATGTAGGGAAAGGAAGTTCCAAAGAAGGATCTGA
TGATGACACAATGAATCTACCAGAGAGGTTGGAGGATAGCTTGCCTGATAGTCCATTTGCGTCGTCTGCACATCATTTGGTTATGT
TTGGTGAATCTATAGACAACAACGGATCGGATTTGTGGTCGCCTTCTTCGGACAATGATGATAATTCTACTCCGTCTACACTCTCT
GACTCCAACTCTTTCAACTGCCAAATGCCAAGGTTACTGCCTATTGGGATGTTACCCGGTGGGGGTGGACCGGCCTGTCGTGTGGG
AATATAAGCAGGAAGAGAGGTAACAAAGAAAGAAAAAACTGATAATATAGAGACCTTAAGTAACCAAAGATGCAGAGGTGTAAAAT
ATAAAGCAGGAAAGTTGATGTAAGAGATAGAGAAGAGAAAGAAGGAAGATTGTTTTACCATTTCTCTAGTATTAATGTGTAATGTG
ATGGACCACAGAAGATGATGTAATATGATATGATATAAATATATATAGGACAAGAAGTATAATCTCTCTAAAGATTTACAAAAGAA
AGAGATTAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002877836 hypothetical protein ARALYDRAFT_485553 [Arabidopsis lyrata subsp. lyrata]18572e-205
AAM66020 unknown [Arabidopsis thaliana]18563e-205
NP_190763 zinc finger CCCH domain-containing protein 46 [Arabidopsis thaliana]18511e-204
AAL87320 unknown protein [Arabidopsis thaliana]18446e-204
NP_001190170 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]7872e-081

Swiss-Prot top hits (Blast detail)Scoree value
Q9SV09 Zinc finger CCCH domain-containing protein 4618514e-206
Q10LZ9 Zinc finger CCCH domain-containing protein 236678e-069
Q0D3J9 Zinc finger CCCH domain-containing protein 534974e-049
Q10M00 Zinc finger CCCH domain-containing protein 224931e-048
Q94CJ8 Zinc finger CCCH domain-containing protein 553918e-037

TrEMBL top hits (Blast detail)Scoree value
B9RIF6 Nucleic acid binding protein, putative7039e-072
Q9LY70 Putative uncharacterized protein MAA21_806724e-068
A5B9W5 Putative uncharacterized protein6563e-066
Q6NKZ1 At3g634506544e-066
B9GWA9 Predicted protein6421e-064

Arabidopsis top hits (Blast detail)Scoree value
AT3G51950.1 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein18523e-207
AT3G51950.2 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein18523e-207
AT3G63450.1 RNA binding / nucleic acid binding / nucleotide binding6542e-068
AT3G63450.2 RNA binding / nucleic acid binding / nucleotide binding6542e-068
AT3G21100.2 RNA binding / nucleic acid binding / nucleotide binding4284e-042

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  20%
 
92  40%
 
111  20%
 
191  20%

Unigene MembersMember information