Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN05915

FASTA Sequence
Unigene ID: UN05915Length: 1285 SSR 
GGATCTTTTATTAGTCCCCCCTCCGACTTCATCGCCCCCTCTCTCAATTCAATCCGACGATAAGAGACTAAAGAACCAAAGCTCCG
TCGATTCCTTCCGATCTAATCCGGTTGTGAGATTCGCTTAGGGTTTTCGTGAAAGATGCCGGCCACCGCAGGGAGAGTTCGCATGC
CGGCGAACAACCGCGTCCACAGCAGCGCGGCGCTTCAGACTCACGGGATATGGCAGAGCGCGATCGGTTACGATCCCTACGCGCCG
ACGGCGAAAGAGGAGCCGAAGACGACTCAGCAGAAGTCTTCTGATGACACCGAGAACTCTTACGCGAGCTTCCAGGGGCTTTTGGC
TCTTGCGCGTATCACTGGGTCGAATAACGATGAGGCTCGTGGGTCTTGTAAGAAGTGTGGGCGTGTGGGGCACTTGACGTATCAGT
GTAGGAACTTTTTGAGTACGAAGGAGGAAGGGGGGAAGGATGGTGGGGGAGATTGAAGCTGCGGTTGTGGAGGGGTTGGAGAAGGT
TAGGAGGTGTGTTGGGAGAGGTGAGGTTAAGGAGGAAGAGAGTAGTGAGGAGGAGGAGAGTGAGAGTGAGGATTCTGATGTTGATT
CGGAGATTGAGAAGATTATTGCTGAGAGGTATGGGAAGAAGAAGAAGGGGAGTGGTGGTAGTAGTGTTAGTAAGAAGAAGAAGAAG
CGTGATGAGTCTGAGTCTGATTCTGATTCTGGAGATAGGAAGAGAAGGAGGAGGTCGAAGAAGAAGAGGAGGACGCATAAGAGGAG
GAGTGTGAGTGATTCTGAGGAAGAGGAGGAAGAAGGAAGGAGTAAGAGGAGGGGAAGAAAGAGAGATGATGATTCTGATGACGACC
GGAGAAGAGTTGAGAGAAAGAGTAGGAAGGAGAAGAGGAGAAGGAGGAGCAGGCGTAACCGGTCTGATGATGACTCAGATTCATCT
GAGGATGATGATGGTGCGAGTGGTAGAAGGCAGAAGCGTAGGAACAAAGTGGCTGCTTCTTCTGACACTGATTATGTCTCAGGTGA
TGAAGATTCACGCGTTGGAAGGGGTTCTTCTAAGAGGTATGAGAAGAAGAGCAGGAAACGCCATCACAGGAAGGACTGAAAAGTAA
AAAGATGTTAGCAGGTTCTGCTGCTATTTGATGTCTCCATTACAAACTATCTATGTCACAATAATGAAACCTGCCTTATGGGATCT
GATTTGTGTTTGGCTCTTGTGGTCTCTTTGTTTCAAAAAGCATGTATGGTTGAGATACTGTTGTGTTGTTGTTAATTGTGT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002881020 hypothetical protein ARALYDRAFT_481806 [Arabidopsis lyrata subsp. lyrata]7262e-074
AAO17572 CAX-interacting protein 4 [Arabidopsis thaliana]7182e-073
NP_565678 CAX-interacting protein 4 [Arabidopsis thaliana]7182e-073
AAM67086 unknown [Arabidopsis thaliana]7111e-072
XP_002283746 PREDICTED: hypothetical protein [Vitis vinifera]4548e-043

Swiss-Prot top hits (Blast detail)Scoree value
Q84Y18 CAX-interacting protein 47188e-075
A1A5I1 Protein FAM1332081e-015
Q9U7E0 Transcriptional regulator ATRX homolog1936e-014
Q6C1L3 Protein PXR11731e-011
Q55FI4 Nucleolar protein 581641e-010

TrEMBL top hits (Blast detail)Scoree value
C0Z376 AT2G28910 protein5309e-052
B9MTX0 Predicted protein4529e-043
B9T3N1 Nucleic acid binding protein, putative4421e-041
C6TBX8 Putative uncharacterized protein4053e-037
A9NVP6 Putative uncharacterized protein3945e-036

Arabidopsis top hits (Blast detail)Scoree value
AT2G28910.1 CXIP4 (CAX INTERACTING PROTEIN 4); nucleic acid binding / zinc ion binding7187e-076
AT3G49601.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 58354 Blast hits to 32469 proteins in 1203 species: Archae - 56; Bacteria - 5471; Metazoa - 26539; Fungi - 6511; Plants - 2874; Viruses - 282; Other Eukaryotes - 16621 (source: NCBI BLink).1972e-015
AT3G28770.1 unknown protein1953e-015
AT4G02720.1 unknown protein1783e-013
AT2G18540.1 cupin family protein1757e-013

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
94  80%
 
71  20%

Unigene MembersMember information