RadishBase

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Information for unigene UN05997

FASTA Sequence

Unigene ID: UN05997	Length: 1514	SSR
GGACATCACATTCACACAAGAACCAGACAGAATTAGAGAGAAAAGAAAAAGAAAACCCCTTTCTCCCCATTGTTGATGGAGGAGAA AGCTTCTTCGACCTCTCTCCCTTTCACTTCTGGATCTACTACTTATACTAAAGAAGCTTACTGTGTGTGTGTTGATAAGCTTTGAG AGAGATTTTCAGTTTGCATGTTACCTTACCCTCCAAGTCTATTATATCTTTAGATTCTGATTTGCTCTTTATCCTTTCATGAAAAA TTCACATATTTTTGTAAGCCATTAGCCACAAAGTTCCAACCTTTAATAAAAAAGTCTATGGATCGTAGAGAAGCTATGGCGGGTTC TTATTATATCCAGAGAGGCATGCCTGGCTCTACTCCTCCTCCTCCTCCTCCTCAGACACAACCCACGTTTCACGGATCACAAGGGT TTCACCATTTCTCCAACCCCAACTCTCCTTTCGTCTCAAACCCAAACCTGAACCAAGTAGGCGGCGGCTCCACTGCATTCGTGTCT CCTCCTTTACCAGTTGAGTCTTCTCCGGCTGACTCTTCAGCGGCTGCTCCTCCTCCTCCTTCTCAGTCTGGTGAGAAGAGGAAGAG AGGACGGCCTAGGAAATACGGACAAGAGGGTCCTGTTTCCTTGGCATTGTCTCCTTCAGCCTCCATGTCCCCAAGCTCTAACAAAC GTGGCCGTGGTAGACCTCCTGGCTCAGGCAAGAAGCAAAGAGTTGCTTCCACTGGTGAATTGATGTCTTCATCATCAGGGATGAGC TTCACGCCGCATGTAATCGTAGTATCCATTGGTGAAGACATTGCGTCAAAGGTTATGTCTTTTACGCAGCAAGGTCCAAGAGCGAT TTGTGTCTTATCCACTACCGGTGCAGTCTCTACCGCAACTATTCTTCAGCCATCACCTTCTCATGGAGCTATTAAATACGAGGGTC GTTTTGAGCTCTTATCTCTCTCAATTTCTTACATGGACGCAACTGAAAATGACGACTCAAACCGCACTGGAAACCTATCCGTCTCA CTCGCTAGCCCTGATGGTCGTGTCATCGGTGGTGGAATTGTTGGGCCTTTGATAGCAGCAAGCCCTGTTCAGGTTATCGTTGGGAG CTTCCTTTGGGCGGTTCCAAAAGGGAAGCTTAAAAAACGAGATGAAGCTTCTGAAGATGTCCAAGACACTGATGGTTTGGAGAACA ACGACAACACTGCACCAACATCACCTCCTCCTCCTGTTCCTCAACAAGGCCAGCACCTTGTTCAGACTCCTGTAGGGATATGGTCA ACCGGTTCAAGATCGATGGATATGCATCATGCCCATATGGACATTGATCTAATGCGTGGATGATGATGATTCATGTGTAGTAGATA AGCATTGAAATCTAGGAGATGAAGAAAGCTAACCTCTCTTTAAGAAAAAAAAAATGTCTTTTGGTTTATGTTTAGGACAAGAAAAG ACTTGTAGTGATTTTTCAGAACTCATGTGTGTTAATCGATTTGGTTTCATAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002878374 hypothetical protein ARALYDRAFT_324562 [Arabidopsis lyrata subsp. lyrata]	1357	2e-147
NP_191690 AT hook motif DNA-binding family protein [Arabidopsis thaliana]	1351	1e-146
CAB71061 putative DNA-binding protein [Arabidopsis thaliana]	1331	2e-144
NP_182109 AT hook motif DNA-binding family protein [Arabidopsis thaliana]	939	6e-099
XP_002272142 PREDICTED: hypothetical protein [Vitis vinifera]	827	6e-086

Swiss-Prot top hits (Blast detail)	Score	e value
Q9S7C9 Putative DNA-binding protein ESCAROLA	223	3e-017

TrEMBL top hits (Blast detail)	Score	e value
Q8L7L5 AT-hook motif nuclear localized protein 11	1351	7e-147
Q9M2D3 Putative DNA-binding protein	1331	1e-144
O80834 AT-hook motif nuclear localized protein 9	939	4e-099
B9RDQ4 DNA binding protein, putative	808	6e-084
C6TK21 Putative uncharacterized protein	776	3e-080

Arabidopsis top hits (Blast detail)	Score	e value
AT3G61310.1 DNA-binding family protein	1358	6e-150
AT2G45850.1 DNA-binding family protein	1030	6e-112
AT2G45850.2 DNA-binding family protein	1030	6e-112
AT1G63470.1 DNA-binding family protein	584	3e-060
AT1G63480.1 DNA-binding family protein	566	4e-058

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	2			67%


19	1			33%

Unigene Members	Member information