Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN06001

FASTA Sequence
Unigene ID: UN06001Length: 1283 SSR 
CGATAACCAAATCACATTTCATTAAGGACTGTTGTTGAGTTTTACAACTTGATCTCCTAGAAAGATAAAAACACAAAAGGACAAAG
GCATACACATGTTTTTTTTTGAGGTACAAGGAATGAAAAACAATCCTTGCAAAATCTCAAACGACCCTTTTTCGAAGAGAAAGGAA
GATCTCACAAAACACTATCCTTCTTTCTATCTTCCTCTCTCTCGCTGTGTATATATAAATTTTGAAAAGCATTGAACTTGGGAGTA
GAAAGAGGATGAGCACTCTCACTCTTCTTCCAAATTTTCTGAAGAGTCATTCACTCTATTCACACCTTTCTTCAACCCTTCTATAT
TCACCCGAAAAAAGCAAAATGAAAAAAAAAAGACCAAACCTTTAAACCTTCTTGACGAAACAGAGTGAAAAACCAACACTTTCTTC
TTCTTCTTCTCACGACCTATACACACTGTGATTCCTTTTGAAGTAGTTGTAGTCTGGTCAAGCCAAAGTGTACCTCGAAACCGCGA
CGTTTGCGGGAGATGTTGAGTGAATGTAGACGAACTCTAGGGACTTTCCGGATTGCAATGAGTGCATGGGAAGGTAAACCGAACGA
GTTTCCTGATCTAGAGAGTCCCCAGATTGGTCCGTAGAGATTCTTGATCGAAAGGTTGAGACTTTTCAGAGCTCTAGGTGATTTGT
TAATCACAGTTGTTGAGTATCTGTAGTAAGTCCTTCCCTTTGACACCCACGAACCTGTCATCTTCTGAACTATAGCCACTGGACCA
GAAGCTCGGACCGGGGAAGTAACTCTCGGTTTACGAATAGGCATTGGTCTTCGAACAACAACAGGAGCAGGAACCACTGGAAGAAG
CTGGCTGTAACCAGAATGGCCACTGCTGAGACGAGCAAGAACACCAAGAAGTGGTGCATTGTTGTAAGTAGCAGGCTCAGTCTGCT
CGTAGTTGTCTCTCCTGTCAGCGAAATTGTCGTAAGCATCGGGACCGCCAACAATAGCACCAGTGAGGAGGTTGGGATCACTGCCT
TTGCGGCTGAACCAGGTGGCGTAACCACCACGGCAGGTGACAAAAGAGCGGTCAACCTTGTAAGAGACGATGGAGGAGCCACGGTG
GTGAACTCTCTGAGGGAAATTGTTACCGTAACCAACCATATAGCTAGTAGCTCTTGGGTTGTCTCCAAGGATGTAATCAACCTGTG
ATTTAGCGAAGGAAAGAAGCTGCGAAGGAGCAACGTTGCCAGCAGAGCATCTCAAGTAGCTTCGAGAGGAAGTTAGGTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_176621 endoglucanase 6 [Arabidopsis thaliana]11492e-123
AAN31840 putative endo-beta-1,4-glucanase [Arabidopsis thaliana]11492e-123
XP_002887890 hypothetical protein ARALYDRAFT_892975 [Arabidopsis lyrata subsp. lyrata]11465e-123
ABK96199 unknown [Populus trichocarpa]9172e-096
XP_002303645 glycosyl hydrolase family 9 [Populus trichocarpa]9172e-096

Swiss-Prot top hits (Blast detail)Scoree value
Q42059 Endoglucanase 611499e-125
Q8L7I0 Endoglucanase 198658e-092
Q5NAT0 Endoglucanase 25906e-060
Q6L4I2 Endoglucanase 155871e-059
Q5NAT8 Endoglucanase 15664e-057

TrEMBL top hits (Blast detail)Scoree value
A9PIJ6 Putative uncharacterized protein9171e-096
B9GXH8 Glycosyl hydrolase family 99171e-096
B9GL66 Predicted protein9161e-096
Q25B23 Endo-beta-1,4-glucanase9018e-095
Q25B24 Endo-beta-1,4-glucanase9018e-095

Arabidopsis top hits (Blast detail)Scoree value
AT1G64390.1 AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2); carbohydrate binding / catalytic/ hydrolase, hydrolyzing O-glycosyl compounds11498e-126
AT4G11050.1 AtGH9C3 (Arabidopsis thaliana glycosyl hydrolase 9C3); carbohydrate binding / catalytic/ hydrolase, hydrolyzing O-glycosyl compounds8657e-093
AT1G48930.1 AtGH9C1 (Arabidopsis thaliana glycosyl hydrolase 9C1); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds4696e-047
AT2G32990.1 AtGH9B8 (Arabidopsis thaliana glycosyl hydrolase 9B8); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds4087e-040
AT2G44570.1 AtGH9B12 (Arabidopsis thaliana glycosyl hydrolase 9B12); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds3702e-035

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
113  100%

Unigene MembersMember information