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Information for unigene UN06003

FASTA Sequence
Unigene ID: UN06003Length: 1126 SSR 
GACACACACACACACACACAGCTCATAGGATACAGCGACAGACCTGAAAAAAAAAAAAACGATGCTTTTACGAAGCGCGTCGACTC
CAATTCTCACCTCGTTGGTCCACGTCTCGAGCCCAATCGAGCCCGAATCTCTTCATCAGATCCAACGGCCCAGATCTCTCACACTC
TCTTCCTCCTCATCCTCCTGCTGCTGTTACAGCCCGATGTCTGTGCATTCCAGCGACGGGAAGATCAAAAGAACGGCGTCGGAGAG
CGATCTCAAACATCTGACATCGACTAATAAGCCGCCGTCGAGCAAGTTCCTCACCGGCGCCCTTATGGAGGACGTGGAGGAAGGAA
TCGGATTCGGAATCATACGCGCGTCTTCTTACGACAACAGAGCGTCGAGCTGGGCGTTGGAGGATGAAACCGAGGTCGGAGGCGGC
GGTGGCGGCGGAGGAGGGAAGAGAAGGAGCGGCGGAAGATCCGACGGTGGTGGTGATGATGGAGAGGATAGCACAGACGTTCATTA
TCGTGAGATGATTGAAGCTAATCCTGGAAACGGGATTTTTCTCAGCAATTACGCCAAGTTCTTGAAAGAGGTTCGGGGAGATTACT
TGAAAGCAGAGGAGTATTGCGGGAGAGCGGTTCTGGTGAGTCCTTACGATGGGAATGTTCTCTCCATGTACGCGGAGCTTGTGTGG
ATGATCCATAAGGATTCGTCTCGTGCTGAGTCTTACTTCAATCGAGCTGTTGCAGCTGCTCCTGATGACTGTTATGTACAAGCTTC
ATATGCGCGGTTTCTTTGGGATGCTGAAGAGGAGGAAGAAGATGAAGATGAAGAGAGACACGGAGAAGTACTTGAGCCTCAAACTT
CTCGGATTGATTTCTTTACCGGACCTTACCCAATTACGGCCATGTCTTAACTCCTTGTCTTGGCATCTTATAGATTTAGTTAAATA
ATGTTACTTCTATGATCTATCTAACCCTTTTGTTTTAATGTGAATTCTTTTAATGTTGCCTCCCTTTCATAATATATATGGGTGTT
TTCAGTTTTAGAATTTGTCTCAGTTGTAGACCTGTAGTAATATACCACCGGAAGGAAAATAAGTATTGGAATAAAAAGTTTTGCTC
TTAAAAAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002871927 hypothetical protein ARALYDRAFT_488924 [Arabidopsis lyrata subsp. lyrata]11034e-118
NP_197519 tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]10578e-113
CBI36320 unnamed protein product [Vitis vinifera]5372e-052
XP_002285275 PREDICTED: hypothetical protein [Vitis vinifera]5291e-051
NP_565230 tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]5022e-048

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q3E9A5 Putative uncharacterized protein At5g20190.110576e-113
Q9SSC6 F18B13.21 protein5021e-048
B7FK92 Putative uncharacterized protein5002e-048
B9SMI5 Putative uncharacterized protein4931e-047
B9IMY5 Predicted protein4903e-047

Arabidopsis top hits (Blast detail)Scoree value
AT5G20190.1 binding11202e-122
AT1G80130.1 binding5027e-051
AT4G17940.1 binding4112e-040
AT4G32340.1 EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G80130.1); Has 2680 Blast hits to 1282 proteins in 184 species: Archae - 2; Bacteria - 433; Metazoa - 1247; Fungi - 71; Plants - 657; Viruses - 13; Other Eukaryotes - 257 (source: NCBI BLink).4014e-039
AT1G04530.1 binding2527e-022

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  33%
 
64  67%

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