RadishBase

| | | |

Information for unigene UN06089

FASTA Sequence

Unigene ID: UN06089	Length: 1146	SSR
CCCATAAACTAAGGCTTTTTCACCATCTCTCGCATTAAATTTTCAGCACCAAAAGGTTTTGGATTACAAATAAAGAAAGTTAAAAA CAAACTGAGTTATGAAATTTGTAAGGAACACAAATCATCTAGAGAGACGCACCTTTCTTAGGTGAAATATTCAAATACAAAAAGAG AGAAAAAAATTGTCCGAGTGGAAAAGGAGTTAAGAAATAAGTCTGTGGCGGTGTGTGTGGGACTAAAAACTCGAAGTGGGTGGGGG CGTTGGTGGTGGTGGTTATGTGCTCTTCATAATGTATCCCAAAATTAGACCGATTAGTCCCACCAGAAGAACGTACATCAAAGGGA TACCACCACTTTGGCTTCTCTTGCTGTCACGCCTCAACTGCTCCAGTTCTCTTTGGAGTTTGTTGTTCAGTTGAATGGCAGACTGT TTCTCCTCGGTTAGCTTTGTGATGAGAGCCCTTGCCTCAGATGTGTTTTCTTGAGGTTCAGCCTTGTCTGCGCTAAATTTCTGAAA AGAAAATTCAGAAGCCTGTCCGTTATCAGAAACAGAAGCCCTTGGTGAAGATCCCTCTTCAGAACCTTCGCGGACTGGTGATGGTG GTAGTGGTGGAGCAACATAAGTAACTCTCAGCTTAGTCTCCTCAACCAAATACCCAGCCTCTTTACTAAACATCTCAGGAGTAACA TCCTTGGCTGTGATACCAGGACTAGCAGTTACACCTTGAAGCAGAAACTTGTCCTTGCACTGCATATCCGCAGGAGCTTCCTTTTG AGCTTGCATGGTCACAAGAACTTCACAAGTGGACCGTGGAAGAACAACTCCAGTGTTAGGCCTAACGCAATACTTCTTCGGATTCG TTGTCTTAACCTTAAAGGCGACATGATTGTCGGTCTTGTTGGTCAAGTAAAGAGAGCATGAGATCTGTTTCTTCAATTCAAAAGGG AACTGAAGGTCGAGAGGCTCGACGGTAAGAAGCTCGCTGTTACTCATCTCGATCAGATCGCCGGAGACTCAAACAGATTCGTCTCG TGACGCGCGTCTCCGGTTCCGACAGAACAGTCGTCGATCGAGAGAGAGAGAGAAAGAGAATCGAGAGAGAGTGGAGAAACTGGGAC AACGCTGTGTGTTTTTGTTTCAGTCTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_567101 vesicle associated protein [Arabidopsis thaliana]	1101	7e-118
AAM63134 putative VAMP-associated protein [Arabidopsis thaliana]	1089	2e-116
NP_182039 VAP-like protein 12 [Arabidopsis thaliana]	992	3e-105
XP_002880160 hypothetical protein ARALYDRAFT_483647 [Arabidopsis lyrata subsp. lyrata]	992	3e-105
CBI38911 unnamed protein product [Vitis vinifera]	899	2e-094

Swiss-Prot top hits (Blast detail)	Score	e value
O60119 Vesicle-associated membrane protein-associated protein C16G5.05c	188	2e-013
Q10484 Uncharacterized protein C17C9.12	181	1e-012
Q16943 Vesicle-associated membrane protein/synaptobrevin-binding protein	175	7e-012
P40075 Vesicle-associated membrane protein-associated protein SCS2	173	1e-011
Q9P0L0 Vesicle-associated membrane protein-associated protein A	173	1e-011

TrEMBL top hits (Blast detail)	Score	e value
Q8VZ95 At3g60600	1101	4e-118
Q8LDM1 Putative VAMP-associated protein	1089	1e-116
Q9SHC8 At2g45140	992	2e-105
B9RD68 Vesicle-associated membrane protein, putative	882	1e-092
A8W459 Vesicle-associated protein	860	4e-090

Arabidopsis top hits (Blast detail)	Score	e value
AT3G60600.1 VAP (VESICLE ASSOCIATED PROTEIN); protein binding	1102	2e-120
AT2G45140.1 PVA12 (PLANT VAP HOMOLOG 12); structural molecule	994	6e-108
AT3G60600.2 VAP (VESICLE ASSOCIATED PROTEIN); protein binding	822	6e-088
AT3G60600.3 VAP (VESICLE ASSOCIATED PROTEIN); protein binding	782	2e-083
AT4G00170.1 vesicle-associated membrane family protein / VAMP family protein	691	9e-073

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	1			14%


20	1			14%


10	3			43%


18	1			14%


12	1			14%

Unigene Members	Member information