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Information for unigene UN06106

FASTA Sequence
Unigene ID: UN06106Length: 1474 SSR 
GGGAAAAGAAAAAACCTAGTAGCCGACTTCGATGAAGAATCCTACGAGTCCTCATCCTTCTTCTTGGTGCCATGAGCCATCATCCT
CTCCATCGTTCTCATCGGTTCCAGATGAAATAGCTGCGAATTGTTTAGCACGCGTCTCGAAATCTCAATACCGTTCAATCAGCTCA
GTCCCCAAGGGGTTCTACTCTCTCCTCTCCTCTCCGGAGATTTACGCAGCTCGATCTCAAATCGGAGCCACAGAGCCTCGCCTCTA
TTTGTGTTGTGAAAGCGTAAGGACGGACAGCACCCGCTGTTACAGCTGGTACAATCTCATGAGTCAAGACCTTAGCGACGACGATG
ATGATGATGATGAGATAATCAAAAAAAAGGAGACGCCTTTATCAGCGTAGACGGGGCTGAAATCAAGATGAAGACTGAGTTGAGGT
TAGTACCTGCTAAAGACTCTTCCTTTCACCATTTAAGTGCTCGATCAACAGAAGCAAATTTAGCCGTTGGTCCCGAGATCTACCAA
ATCGGCGGAATCAACAAAAAGGGCAAGCGATCTAGATCTGTCTGTGTGCTTGATTGTCGGAGTCACACTCAACTTCGTGCTCCTAG
GATGAGGGTTTCAAGGGAATGCGCCAAAGCTTGTCTTTTTGATGGGTGTATATATGTTCTGGGAGGAACCAGAAGAGACAAAGAGT
GTTGGGGGTGAAGTTTTCGACTTAAAGTCTCAAACTTGGAAGAAAGAGACACTTCCTAGCCCCCTACTTATTGGTGGTGATGAATT
TGGTTGTAAATTCGAAGTTTTAGTCCTCGGAGCTAAGATATACGTTATCACCGAGCGTAACAAGTATGCTTATGATCCTAAACAAG
GAAGATGGCTACTGCTGCTAGACACGCATTTTGTGGGTCTAAATTCCATACTAGAACTAGGTACTGTTTGGTGCGTTCTAGATAAT
CTAGTGTTTAAGGAGTTTAGCGATGACTTGTACTGGTATGACTTGAGCTGTGGAAAGTGGTTACTTGTCGAGGGTTTGGAAGATCT
GTGCTATACCAAGGTTAATTGTCGTTACCGTATGGTTCAATTAGTTAACTATGGTGGGAAACTGGTGATTGTATGGCTAGTGTTAC
CTGAACCTGTATTCAGGAGGAATAAGCCGCCTGTCATTCAACAAGAGAAAACTTGCTTTGCGGTGATTAGGCTGGAGAAGCGTCTC
ACTTCATCTGGACTTGCCATTTGGGGAGAGATCGAACGGTTGAGCTTCTCTCTTGTTCACGGCTCATATAATCCCTTGACCTGTCT
ATCAGTCTCGCTTTGATTATATCAAAGGGATCCTCTCTTGCTTTAAATTTGGAGTTGAGTGAAATTTTATTTCACTTTGTTTTGTA
CTCTTTTTTTATTTATGTTTTTTTTCCTACTTCATCTTTGTGTACGCTCATATAGATTTTCTTGTTACTTCATATTAATAAAGTCT
TTTTGTGCTTAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002869105 hypothetical protein ARALYDRAFT_912870 [Arabidopsis lyrata subsp. lyrata]2381e-017
XP_002869107 kelch repeat-containing F-box family protein [Arabidopsis lyrata subsp. lyrata]2362e-017
XP_002867915 hypothetical protein ARALYDRAFT_329577 [Arabidopsis lyrata subsp. lyrata]2093e-014
XP_002869106 kelch repeat-containing F-box family protein [Arabidopsis lyrata subsp. lyrata]2066e-014
XP_002869437 hypothetical protein ARALYDRAFT_913571 [Arabidopsis lyrata subsp. lyrata]2066e-014

Swiss-Prot top hits (Blast detail)Scoree value
O49618 Putative F-box/kelch-repeat protein At4g351201982e-014
Q8GXF6 F-box/kelch-repeat protein At4g198701892e-013
P0C2G4 F-box/kelch-repeat protein At4g198651821e-012
Q9LYY7 Putative F-box/kelch-repeat protein At5g029801767e-012
Q9LX87 Putative F-box/kelch-repeat protein At3g460501732e-011

TrEMBL top hits (Blast detail)Scoree value
Q6NL02 At5g395601894e-012
Q9FKA6 Emb|CAB79695.11894e-012
A0MFD0 Putative uncharacterized protein (Fragment)1671e-009
Q4ABZ3 117M18_271643e-009
Q0WWX6 Putative uncharacterized protein (Fragment)1591e-008

Arabidopsis top hits (Blast detail)Scoree value
AT4G35120.1 kelch repeat-containing F-box family protein1982e-015
AT4G19870.1 kelch repeat-containing F-box family protein1892e-014
AT4G19870.2 kelch repeat-containing F-box family protein1892e-014
AT5G39560.1 FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: shoot, cauline leaf, stamen, leaf; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G19870.2); Has 2231 Blast hits to 1863 proteins in 132 species: Archae - 8; Bacteria - 107; Metazoa - 1341; Fungi - 6; Plants - 633; Viruses - 27; Other Eukaryotes - 109 (source: NCBI BLink).1892e-014
AT4G19865.1 kelch repeat-containing F-box family protein1821e-013

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
111  50%
 
61  50%

Unigene MembersMember information