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Information for unigene UN06139
| FASTA Sequence |
| Unigene ID: UN06139 | Length: 677 |
SSR | | ATAATTAATCACTCAATTCAAACCCTAACAAATGTGAGACAATATAACAAACTAACAAACATAATACTAGCTCCTGCTAAGAAATT
ATCACATTTCTCTGTTTCAAATAGATTAGAGCTAATTAATCGATTGATTAATCAAATAATAAAGTAGGGAATCAAAATTAGGCAGT
AATTGGGAAGTGAAGAAAGACGAAGAAGTTTCAACTCCTTAAAAGCAGGATCTTGTAATAAAAAGACTTTGTCCCCATCCCCAACA
CCTATCATGTGTAAGTATTCTCTGTCTTCTCTTTCTTTCCCTTTGAACAAGAGTCTCTGCTCTATTGGCTCAATTCCACTCTTTAT
TGCTATCATCATCTTCAATTCACCGAAAGTGGAGTTTGCGTCAATGGAGATTTCATATGAAGGCTGAGAAACAGTGGAGACTTTAA
GGCTGATTAAATCGTCAGTGTTGGAATCTTCTGATCTCTTCTGAACCAGCATCCCTCCAGGTCTCATCTCCCATTTTATAGTGTTA
TTGTTACATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGACCTCTTGTTGTTGCTATTGCTTGTCCCAATTCT
TCCACACCCAAACCCAATGCAAAACCTCTTTGGCATTAGCTTTCCCATTCTCTCTCTTCTTTCTTTTGCTTACCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002868643 ubiquitin family protein [Arabidopsis lyrata subsp. lyrata] | 668 | 4e-068 |
| NP_198879 ubiquitin family protein [Arabidopsis thaliana] | 665 | 9e-068 |
| NP_196940 ubiquitin family protein [Arabidopsis thaliana] | 417 | 5e-039 |
| XP_002871615 ubiquitin family protein [Arabidopsis lyrata subsp. lyrata] | 416 | 7e-039 |
| XP_002526949 protein binding protein, putative [Ricinus communis] | 401 | 4e-037 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q54W36 Hybrid signal transduction histidine kinase H | 126 | 1e-006 |
| Q6ZQ93 Ubiquitin carboxyl-terminal hydrolase 34 | 124 | 2e-006 |
| Q5RHD1 Lysine-specific demethylase 7A | 123 | 3e-006 |
| P0CF52 Lysine-specific demethylase 7B | 123 | 3e-006 |
| Q54SK5 Hybrid signal transduction histidine kinase M | 120 | 7e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FM35 AT5G40630 protein | 665 | 6e-068 |
| Q9LY93 At5g14360 | 417 | 4e-039 |
| B9SLT0 Protein binding protein, putative | 401 | 3e-037 |
| C6TN95 Putative uncharacterized protein | 372 | 6e-034 |
| B9GIX8 Predicted protein | 360 | 1e-032 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G40630.1 ubiquitin family protein | 665 | 4e-070 |
| AT5G14360.1 ubiquitin family protein | 420 | 1e-041 |
| AT5G62100.1 ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2) | 192 | 3e-015 |
| AT5G62100.2 ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2); protein binding | 192 | 3e-015 |
| AT5G62100.3 ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2) | 192 | 3e-015 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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