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Information for unigene UN06233
| FASTA Sequence |
| Unigene ID: UN06233 | Length: 791 |
SSR | | CGGTTTAAGTCGGATGAAACTGGAATAGATTCTTGTGTTGAACCAAGTTACATACTTTAATCAAATTCATTAGGAATGCAAGTTTC
TGGGGAAAACAACTAATAAGCCTTACAAATCGATGACCAGTTCTTAAGAGTTTCAAAATAACACCTAAGGGCAAGAAACAAAAAAC
AAAAAGACAATAAAACTCTCTCTTCACGCCTCACTCTTCTTCTTTTTCTTATCCTTCTTTTCCTTCTTCTTGGCAGGCATCTCAGT
TTCTTCTTCCTCGTGCTTCCTCTTCTTCTTCTTCTTTGAAGGTTCCTCAGATCTTGGGCTCTTCGGTCTCAGGCTCTACTTCAGCC
TTCTTCTTCTTTGATTTCTTCTTAGATGGTTCCTCAGTCTTGGCTTCTTCCTCCTCTGCTTCAGCCTTCTTCTTCTTCTTTTTATC
CTTCTTCACACTCTCCTCAGCTTTGGAAGTTTGTCCAGTAACAGAGTCAGCAGCAGTGTTGTAAGTCTTAGCAGGAGTGATCAGAC
CACCAGATCCCACCTTCTTATCCTTGTCATAAGCTTCAATCTTTGGTTTGCCTTTAGCTGAGCCAGAGAGACGTCCTGCGTCTTTC
CCTTCCAGACTTCTCAACCTTGCTTCAAGCTTTAAACGGTTCTCAACTCCCATACTATTGTCCTCCCCATCACCGAGAGCATCACA
ACGGATAGCAAGCGCAGCTTTCGCAGCTAGCGACCTCGAGATTTTACCCTTGTTCTTGGGCGCAGCTTGGCCAACCACAGATGCAT
GGTAGATCAGACCGTAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_198064 putative nucleolar protein 5-1 [Arabidopsis thaliana] | 636 | 3e-064 |
| XP_002874406 hypothetical protein ARALYDRAFT_489610 [Arabidopsis lyrata subsp. lyrata] | 631 | 1e-063 |
| XP_002884489 hypothetical protein ARALYDRAFT_896572 [Arabidopsis lyrata subsp. lyrata] | 606 | 9e-061 |
| NP_187157 putative nucleolar protein 5-2 [Arabidopsis thaliana] | 584 | 3e-058 |
| ADN33903 MAR-binding protein [Cucumis melo subsp. melo] | 548 | 5e-054 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O04658 Probable nucleolar protein 5-1 | 636 | 1e-065 |
| Q9MAB3 Probable nucleolar protein 5-2 | 584 | 1e-059 |
| Q4R779 Nucleolar protein 58 | 332 | 2e-030 |
| Q9Y2X3 Nucleolar protein 58 | 328 | 7e-030 |
| Q6DFW4 Nucleolar protein 58 | 320 | 6e-029 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O65334 SAR DNA-binding protein-1 | 532 | 2e-052 |
| O65335 SAR DNA-binding protein-2 | 531 | 3e-052 |
| B7FLW5 Putative uncharacterized protein | 515 | 2e-050 |
| B9I857 Predicted protein | 502 | 7e-049 |
| Q9AV96 MAR-binding protein | 499 | 2e-048 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G27120.1 SAR DNA-binding protein, putative | 636 | 1e-066 |
| AT3G05060.1 SAR DNA-binding protein, putative | 584 | 1e-060 |
| AT5G27140.1 SAR DNA-binding protein, putative | 282 | 1e-025 |
| AT1G56110.1 NOP56 (Arabidopsis homolog of nucleolar protein Nop56) | 201 | 3e-016 |
| AT3G12860.1 nucleolar protein Nop56, putative | 184 | 3e-014 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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