Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN06273

FASTA Sequence
Unigene ID: UN06273Length: 1161 SSR 
GGTGAAAACAGGATTTATTATTATAAAATGCATACAAGAAAAGAAGGGAGGAAACAGCATAGAGCAAACTAGTTAATGCTTAAACA
AAACAAGCTCATAAGAAATTCACAAAATCCCAAATATAGTACATCATTGCAGAACAAAAGCTAGATAAGCAAAGAAATTACATAAC
AGTAAATAAAAGATTGGATCTTTAGTTCATCATATGGTTCAGCTCTGGCTCTTGAAAGGAATTGCTCTGATGACAATCTGGTGATA
GAGTGCTGCTAGAGCTGCTCCAATGAATGGTCCAACCCAGAAAATCCACTGGTCGTCCCAGGAGTGTTCCCTGTTGTAAATAATGG
CAGCTCCAAGACTTCTAGCTGGATTGATTCCGGTTCCGGTTATCGGAATTGTCGCCAAGTGTACCAAAAACACTGCAAACCCGATT
GGGAGTGGTGCCAAAATCGGGACGTGTGAGTCACGGGCGCTTCTCTTGGCGTCGGTGGCGGAGAAGACCGTGTAGACGAGAACGAA
CGTTCCGATGATCTCGGCACCGAGACCAGATCCTTTGGAGTAGCTGGGAGCGACGGTGTTGGCACCGCCACCGAGAGTCTGGTACG
GCGTTGGCTGGAAACCCTTGACGACTCCGGCACCACAGATGGCTCCGAGACATTGCATAATCATGTAGAAAACAGCTCTGGTCAGA
GACAACTTCCTAGCCAAGAACAGACCGAACGTAACCGCTGGGTTGATGTGTCCACCTGAAATTCCAGCAGTACAGTAGACGAGAGC
AAAGATCATGCCACCAAAAGCCCAAGCGATGCCTTGGATTCCAACAGAGGCACACATGTTTGGTGCTCTCTTCACTCCCATCACTG
TCAACACTGTGATGTAAAGGAAGAGGAAAGTAGCTATGAACTCGGCGATTCCTGCTCTCCAGAAAGACCACGAGCTCAGCTCTCCT
GGCTCGAACAGTGGCGCAGGTGGTGGCTCTTTGTAGTCCTTGTCGGACTGAGCTGATGTTCCGATGGGCTGCCTCTCCGGGAACTT
GTTAGCTCCAACTCTCACATCTTCTTCTTTGCCTTCCATCTCTCTCTCTCTCTCTCTTTTTCAGGGTTCTTTCACTCTAGAAAGGT
TAAAAAGCGGTGAGCTTTTTACTTCTTCTTTCTTGTTTTGTGT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ34288 unnamed protein product [Thellungiella halophila]14735e-161
ABO71659 trans-membrane water channel protein [Brassica juncea]14726e-161
XP_002889360 hypothetical protein ARALYDRAFT_470115 [Arabidopsis lyrata subsp. lyrata]14377e-157
NP_171668 aquaporin PIP1-3 [Arabidopsis thaliana]14369e-157
AAL32688 plasma membrane intrinsic protein 1C (transmembrane protein B) [Arabidopsis thaliana]14323e-156

Swiss-Prot top hits (Blast detail)Scoree value
Q39196 Probable aquaporin PIP1-414463e-159
Q08733 Aquaporin PIP1-314364e-158
P61837 Aquaporin PIP1-114185e-156
P61838 Aquaporin PIP1.114185e-156
Q06611 Aquaporin PIP1-214087e-155

TrEMBL top hits (Blast detail)Scoree value
A4URF3 Trans-membrane water channel protein14724e-161
A9X4U3 Aquaporin PIP114214e-155
Q39384 Transmembrane channel protein14214e-155
Q7GCI6 Plasma membrane aquaporin 1c14214e-155
Q9MBA0 Plasma membrane aquaporin 1b14188e-155

Arabidopsis top hits (Blast detail)Scoree value
AT4G00430.1 PIP1;4 (PLASMA MEMBRANE INTRINSIC PROTEIN 1;4); water channel14472e-160
AT1G01620.1 PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C); water channel14373e-159
AT3G61430.1 PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A); water channel14193e-157
AT3G61430.2 PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A); water channel14193e-157
AT2G45960.1 PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B); water channel14095e-156

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
124  100%

Unigene MembersMember information