RadishBase

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Information for unigene UN06329

FASTA Sequence

Unigene ID: UN06329	Length: 882	SSR
GGGAGACAAAACTGAAAAAAGAATAGAAAACACTGTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGCAACAATGGCGTTGCACGTC ATATCATCATCATCATCATCTTCAGCCACTTGTGTGACCTTGGCTTCCACCATCAGAGCCTTCGTTAGACCTTCTATCTCCCTCAG AAGCACTCCATTTACTCGCTCTCCGTCGAAGCTTAACCTCCTTCCTCCCTCCGTCCCTCCTTCATCATTTCCTCCGCTTCGTCTTT GTAGACGAGGCTTCCAAGGTGGTCGTATCAAAGCGATGGCTTCTCCTGCTCCCGGATCGGTCAACAAGCCAGAGGAAGAGTGGCGT GCGATCCTGTCTCCTGAGCAATTCAGGATTCTAAGGGAGAAAGGCACTGAATATCCAGAACAGGAGAATACAACAAACTATTCGAA GACGGCATCTATTCCTGTGCAGGATGTGGAACTCCTCTTTACAAATCCGCCACCAAGTTCGATTCCGGTTGTGGCTGGCCAGCCTT CTTCGACGGCATTCCCGGTGCTATAAACCGGACTCCTGATCCAGATGGGAGAAGAATAGAGATCACTTGTGCGGCTTGTGGAGGAC ATCTCGGTCATGTTTTCAAAGGAGAAGGTTTCCCTACACCTACCGATGAGCGACACTGTGTGAACAGTGTCTCTCTCAAGTTCGCA CCAGGGAATTTAACCTTGTAATAATAATGCACTTGTGTTGTGTAATCCTATTGTCTATTTCTCCTGCACGGTGTTTTTGTCTTGCT TGGTGAAACTACTGTTAGTTTCAACTCCAAGTAATGAGGTCGCTGAATTAAGTCCTTGTGACTCTTCGTACTGTCATAAACATGTA TAAGATCTCACCCAAGCTTGTG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002867820 methionine sulfoxide reductase domain-containing protein [Arabidopsis lyrata subsp. lyrata]	538	8e-053
AAM62876 unknown [Arabidopsis thaliana]	529	9e-052
NP_567639 peptide methionine sulfoxide reductase B2 [Arabidopsis thaliana]	529	9e-052
NP_001148386 LOC100281999 [Zea mays]	518	2e-050
ACU13301 unknown [Glycine max]	516	3e-050

Swiss-Prot top hits (Blast detail)	Score	e value
Q9C5C8 Peptide methionine sulfoxide reductase B2, chloroplastic	529	4e-053
Q10L32 Peptide methionine sulfoxide reductase B5	507	1e-050
Q6AUK5 Peptide methionine sulfoxide reductase B3, chloroplastic	486	4e-048
Q9ZS91 Peptide methionine sulfoxide reductase B5	462	2e-045
Q84JT6 Peptide methionine sulfoxide reductase B9	450	6e-044

TrEMBL top hits (Blast detail)	Score	e value
B6T2C6 Peptide methionine sulfoxide reductase msrB	518	1e-050
C6SVM8 Putative uncharacterized protein	516	2e-050
A9NKG2 Putative uncharacterized protein	512	6e-050
B8APW2 Putative uncharacterized protein	507	2e-049
B9GJ03 Methionine sulfoxide reductase type	506	3e-049

Arabidopsis top hits (Blast detail)	Score	e value
AT4G21860.1 MSRB2 (methionine sulfoxide reductase B 2); peptide-methionine-(S)-S-oxide reductase	530	3e-054
AT4G04830.1 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	462	2e-046
AT4G21850.1 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	450	5e-045
AT4G04800.1 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	443	3e-044
AT4G21840.1 methionine sulfoxide reductase domain-containing protein / SelR domain-containing protein	435	3e-043

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	1			33%


6	2			67%

Unigene Members	Member information