 |
Information for unigene UN06355
| FASTA Sequence |
| Unigene ID: UN06355 | Length: 752 |
SSR | | GGAGAGAAAACCCTCAACAGAGAGAGAGCGAGAGAGAAGTGTAGATTCTAGATTGAGAGAAGAGAGAGAGAGAGATGGCAGACGAA
GGTAAAGACGAGGCGGGAATGGATCAGGTAGAGGAGGATTTCTCAATATGGAAGAAGAACACACCATTCCTCTACGATCTTATGAT
CTCCAACCCTCTCGAATGGCCCTCTCTCACCGTCCACTGGGTCCCATCCCCTCCGTCTCCTTACGCCGCGGATCCTTACTTCGGCG
TCCACAAGCTCATCCTCGGAACCCACACTTCCGGCGACGCTCAAGATTTCCTCATGGTCGCCGACGCCGTCATCCCAACTCCCGAC
GCCGAGCCTGGGCTAGGCGGCACAAATCAAGATCCCATCGTCCCTAAGGTGGAGATTAGGCAGAGAATACGTGTCGATGGAGAAGT
GAACAGAGCGCGGTGCATGCCTCAGAAGCCAACTCTCGTCGGCGCCAAGACAAGTGGGTGTGAGGGTGTTTCTGTTTGATTACGCC
AAACATGCTTCGAAGCCTTCTCAGACGAGTGATTGTGATCCTGATCTGAGGCTGCTTGGACACGACATGGAAGGGTATGGATTGTC
TTGGAGTCCCTTCAAGGAAGGTTATCTTCTGAGTGGTTCGCAGGATAAGAGATATGCCTTTGGGATGTTTCAGCTACACCGCAAGA
TAAGGTTCTGATGCAATGTTTGTGTATGAGGGACATGATGCGCTGTGGAGATGTAGCGTGCACA
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002886076 hypothetical protein ARALYDRAFT_480561 [Arabidopsis lyrata subsp. lyrata] | 724 | 2e-074 |
| AAM65591 putative WD-40 repeat protein, MSI2 [Arabidopsis thaliana] | 709 | 9e-073 |
| NP_179269 histone-binding protein RBBP4 [Arabidopsis thaliana] | 707 | 2e-072 |
| NP_195231 histone-binding protein RBBP4 [Arabidopsis thaliana] | 673 | 1e-068 |
| AAB70244 WD-40 repeat protein [Arabidopsis thaliana] | 673 | 1e-068 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O22468 WD-40 repeat-containing protein MSI2 | 707 | 7e-074 |
| O22469 WD-40 repeat-containing protein MSI3 | 673 | 6e-070 |
| O22466 WD-40 repeat-containing protein MSI1 | 200 | 4e-015 |
| O22467 WD-40 repeat-containing protein MSI1 | 197 | 1e-014 |
| Q24572 Probable histone-binding protein Caf1 | 181 | 7e-013 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LA40 Putative WD-40 repeat protein, MSI2 | 709 | 6e-073 |
| Q5HZ33 At4g35050 | 673 | 9e-069 |
| Q84WQ9 Putative WD-40 repeat protein (MSI3) | 671 | 2e-068 |
| A0SEK9 Putative retinoblastoma binding protein | 552 | 1e-054 |
| B9T851 Retinoblastoma-binding protein, putative | 476 | 6e-046 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G16780.1 MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2) | 707 | 7e-075 |
| AT4G35050.1 MSI3 (MULTICOPY SUPPRESSOR OF IRA1 3); protein binding | 673 | 6e-071 |
| AT5G58230.1 MSI1 (MULTICOPY SUPRESSOR OF IRA1); protein binding | 300 | 1e-027 |
| AT2G19520.1 FVE; metal ion binding | 155 | 7e-011 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
