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Information for unigene UN06384

FASTA Sequence
Unigene ID: UN06384Length: 606  SNP
AAAAATTTATGTAAAATGCAATAAAAATAATTACAAATATTGCGAATTTTTGATAGACAGTTATATATTTTATCATATATAGATAA
AATAAATGAACGTAGATATGTTAATATTAGCGTATGACATTTTAAATTTTTTAGACCACTTGCATGAAGATCGAAGAAAACGTCTA
TCCTCGGATGACTAACTAGTATATCCAATCATACTCTTTATGTGGGGCTTCTGTATTTTTTCTCGTCAAATAGATGCCATCTTCTC
TGGCTCTCCAATCCCATAAACCACGTCTTTTAAATGCTCTGAAGCTCTGATGGTGTTTAAATCCAGGCCCTTGTTTCAAAGTGCAC
ATATAACGCGTGTTCCCCACAACATTCAAACCAAAATTGAATTCCCAATGAGTTCCTGGTTTTAATGTTCTCTCTTTTATCCTGTC
GTCTGCGGAGAAGCAACTCATATTAAGATCTTTCTGGAATTTGAGTTCGTTCGAAATCCTCACTCCATGGCCATGTACATAACCAA
TTATGCATAGGCTAAAAAGGAATAGAAAGATGGAGAGATCTTTCATCTTTTTATAAAAAGATGGTAAGATTTCTTTTCATTTGTCG
TTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002880641 hypothetical protein ARALYDRAFT_901092 [Arabidopsis lyrata subsp. lyrata]3548e-032
XP_002876996 hypothetical protein ARALYDRAFT_484465 [Arabidopsis lyrata subsp. lyrata]3512e-031
BAB01206 unnamed protein product [Arabidopsis thaliana]3467e-031
AAF79667 F9C16.21 [Arabidopsis thaliana]3432e-030
NP_189322 self-incompatibility S1 family protein [Arabidopsis thaliana]3413e-030

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9LJ82 Gb|AAC28191.13465e-031
Q9LNZ7 F9C16.213431e-030
Q9LW23 Similarity to Drosophila pumilio protein3412e-030
Q9LVX2 Gb|AAC28191.13072e-026
B3H5H4 Uncharacterized protein At3g27331.13026e-026

Arabidopsis top hits (Blast detail)Scoree value
AT3G26870.1 self-incompatibility protein-related3411e-032
AT3G27680.1 self-incompatibility protein-related3071e-028
AT3G27331.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27329.1); Has 48 Blast hits to 48 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3033e-028
AT3G27329.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27331.1); Has 48 Blast hits to 48 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2962e-027
AT3G26860.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27331.1); Has 41 Blast hits to 41 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2837e-026

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  10%
 
73  30%
 
66  60%

Unigene MembersMember information