RadishBase

| | | |

Information for unigene UN06389

FASTA Sequence

Unigene ID: UN06389	Length: 1647	SSR
GGGCAAATCTAAACCAGACGCATTTGATTGGGTTTTAAAAATGTTTTTCCTCTCTAATAAACAAACATAAAACAGAACAAAGGGGG CTAACTAGCGCCTAAAGATAAACCAAATCACAAGAAGTCTTAAAACCAACAAATCTGATCTAACCAAACAGTTAGGGGATTGTTCA TAATATGCAAAAGCAAATAGACAAAGGCGGGGGGCAATAAACAATGAGTTTTTTTTTTTAGGATCGAGCTCTCTTGTTGCTGCAAG ATGGGCACTTGTACTGCTTGATGTGCTCAGCCCTGGCTGGTGTAATCTTCACACACTTGCCATGGAACCAGTTCTCACAGAGGTCA CAGCAGATCCAGAACTCATCGGCGGCATAGCTCTCACCACATGCCCCACATTGTGTTTCCCCTTGCTCATCATCATCTTCATCATC CTCATCCTCTTCCACACCTTCCTCTTCCTCTTCATCTTTGGGCTCTGGCTTTGAGTACTTGGGCTTAGGTTCTGATCCTCTCTGTA ATTTGACAAAGGGAACATAAAATAACACTCAACTTTATGCCAGTAGCAAAAAAATAAAGCAAAAGCTTGTTACCTTGGAGTTTGAC TTGGATCTGTTGCTGCTGTCGTTGGAAACAGAGGACTTCTCCTTTGATTGTTTCTTTGCAGTGCCAGTCACAACCTCGAATATTGA CGGGAGGTCATTCATCATATTGAAAAGCCGTTTCCTGCAAGAACAGAAAAGGTGGAAGAACATCAATCAAAGAGAGCTGAAACTGT GAAGGAGTAGAAAACTTGACAAGAATGAATAATGGTATCATCTAATCATATGCCAGAAAGAACATAGAGGCAAGAAGATAAGACAT ATACCTATCAGCTTTGTCAAATCCAAACCTGGCTCCAAAAAAGAAAGCAACAGCAAGAAGCCATGCATCACTGTGGACAGCAACAA GGGAAAACCAATCCTTTTCCATCATCCCGTCTCGGGCAAAGTTGATACCCAAGACAGGCTCTGGGAGCTCCGGGGGAACCTCTTCG GCTGGTAGATTCACTTCCCAGTGCTCGTTCGGGTGTCCATAAGGGCACAAGTTCTCCTTTTCTATAAAATCACAAAAGAAAAAGAC AAAGACTTTCCTCAGTGGAAACCAATTCCACAAACAAAGTTCAACACTTTACTCATCTATTGCTCACAATTCAGAGAAACTATCAA AACCCCTAAATGCATCATTAAACACTCAGCTCAAAACAGAGCACAACAAAGACAATTCAAACGCACATTAAAAAAAAACAGTAACT TTCGTCAATCCCCAAAACAAATCTTTAAAGGGTAACTAACGCTCACCTGGATCGCAAAGTCGGTAAAACTCCTGAACATCTGCGAA ATTAAATAAAAAAAGTTGAGATTTTTTGATGACAATGGAAGAGGCATAGATAATAATAAGTGAACAATAATAATATTTACCAGTGG TTAAAGCCTTAATCATGCCATTCCTACGACCCTTAAAATCCCTAAAAACCTCCTCCACCGTTCGTGGGTTGTACGCTGCACCACCA CCACCACCACCCTCCATAATCCTTTTACACAGAGAAGGAAGTATTTTGACTTGCCCTGAGAAATTGGTGTGTGCGTGAGAGAGAGA GAGAGAGAGCTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAE98515 nucleic acid binding protein - like [Arabidopsis thaliana]	453	1e-042
NP_197993 alfin-like 4 protein [Arabidopsis thaliana]	452	2e-042
AAC26230 similar to Medicago sativa nucleic acid binding protein Alfin-1 (GB:L07291) [Arabidopsis thaliana]	451	3e-042
XP_002874304 hypothetical protein ARALYDRAFT_910695 [Arabidopsis lyrata subsp. lyrata]	445	1e-041
ABS11091 PHD zinc finger protein [Triticum aestivum]	384	1e-034

Swiss-Prot top hits (Blast detail)	Score	e value
O81488 PHD finger protein At5g26210	452	8e-044
Q9W0T1 Nucleosome-remodeling factor subunit NURF301	156	2e-009
Q5RHD1 Lysine-specific demethylase 7A	127	4e-006
Q6ZMT4 Lysine-specific demethylase 7	126	5e-006
P0CF52 Lysine-specific demethylase 7B	125	7e-006

TrEMBL top hits (Blast detail)	Score	e value
Q0WWI3 Nucleic acid binding protein-like	453	1e-042
Q2HIV6 At5g26210	452	1e-042
Q06A76 PHD4	386	6e-035
A7L5U6 PHD zinc finger protein	384	1e-034
B9RK32 DNA binding protein, putative	384	1e-034

Arabidopsis top hits (Blast detail)	Score	e value
AT5G26210.1 AL4 (ALFIN-LIKE 4); DNA binding / methylated histone residue binding	453	5e-045
AT5G20510.1 AL5 (ALFIN-LIKE 5); DNA binding / methylated histone residue binding	363	1e-034
AT2G02470.1 AL6 (ALFIN-LIKE 6); DNA binding / methylated histone residue binding	359	4e-034
AT3G42790.1 AL3 (ALFIN-LIKE 3); DNA binding / methylated histone residue binding	359	4e-034
AT1G14510.1 AL7 (ALFIN-LIKE 7); DNA binding / methylated histone residue binding	351	4e-033

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	1			33%


9	2			67%

Unigene Members	Member information