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Information for unigene UN06411

FASTA Sequence
Unigene ID: UN06411Length: 1578 SSR 
GGAGCCATTACCAGAGCTCAACGAGCTCTCTATTCTCTACACACTTCTTCTTAAAAGAGGAAAATCGGATCTTAACAATTTTTTTT
GCAAGATGCAGACGACCAACGGCTCAGATTCATCGTTAGCAACTCCCGGAGCGACGACGCCTCCGCCGCCTCAGCAGTGGCAACAA
CAACAACAGCAACATTGGATGGCGGCCATGCAGTATCCAGGCGCAGCGGCTATGATGATGATGCAGCAGCAACAGATGATGATGTA
TCCTCACCAATACGTTCCTTACAATTATCAGCAGCAGCAGCAGCATCCTCACTTCCAATACGCGTCGTATCAACAGCAACACAAGA
CACATGAGCGCGGATCTGGAGATGATGTGAAGACTCTATGGATTGGTGATCTTCTTTATTGGATGGACGAGACATATCTCCACAAC
TGCTTTTCTCACACCGGCGAGGTTTCTTCTGTGAAAGTGATTCGTAACAAGCTAACATGTCAATCAGAAGGGTATGGTTTTGTTGA
GTTTCTTTCGCGAGCTGCAGCTGAAGAGGTTCTTCAGAACTTTAACGGTTCAGTAATGCCAAACTCCGAGCAGCTCTTCCGTCTAA
ACTGGGCATCTTTTAGCACTGGTGAGAAGAGAGCAGTTGAGAATGGTCCAGAGCTATCTATATTCGTTGGAGATTTGTCTCCAGAT
GTGACCGACACTTTATTGCAAGAGCTCTTTGTTGAGAGATATCCATCTGTCAAGAGCGCTAAAGTTGTGATCGACTCCAACACTGG
CCGGTCTAAAGGTTACGGTTTTGTTAGGTTTGGTGATGAGAACGAGAGATCAAGGGCTTTGACGGAGATGAATGGAGCTTATTGTT
CCAACAGGCAGATGCGTGTAGGTGTTGCGACCCCTAAAAGAGCCGTTGCTAATCAGCAACAACAGCATCATCCTTCACAAGCTCTG
ATACTGGCTGGTGGACATGGAGCAAATGGTTACATGGCTCATGGCTCACAGTCTGATGGTTAATCAAACAACTCAACTATATTTGT
TGGTGGCATTGATCCTGATGTTACAGAAGAAGACCTCAGACAACCTTTCTCCCAGGTTGGAGAGGTTGTTTCGGTGAAGATCCCAG
TAGGCAAAGGATGTGGTTTCGTCCAATTAGCTAATAGGAAGAGTGCTGACGATGCCATCCAGAGTTTGAACGGGACAGTCATAGGC
AAGAACACTGTCAGACTTTCTTGGGGAAGAAGCCCGAACAAGCAGTGGAGAGGAGACTCGGGGCAGCAGTGGAATGGAGCACAACG
AGGACAAGGTTGCAACAATGGAGGATATGCTAACCACCACGACTCCAACACCTATCCTGCCGAGACTTGAAGAGAAGAGAATCAAA
AATTGATCATGGTCATATGGTGGTTAAAAAGCCTCTGTCATTGCTAAACTTGTAGTGGGAAAAAAAAAGAATTGTAGTGGGAAAAA
AAAAAGAATTTTTTTAGATGGATTTGATTTTGATAGACTTATGCTGTTGTTTGGAGATTCACAAATTTTGGTTACTACTGGTTTCT
CACAGACTAACATGAATGGTTGTGTTTGTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_188544 RNA-binding protein 47B [Arabidopsis thaliana]18563e-205
XP_002885294 RNA-binding protein 47B [Arabidopsis lyrata subsp. lyrata]18402e-203
BAB02953 DNA/RNA binding protein-like [Arabidopsis thaliana]17112e-188
AAM67293 nuclear acid binding protein, putative [Arabidopsis thaliana]17032e-187
NP_175383 RNA-binding protein 47A [Arabidopsis thaliana]15776e-173

Swiss-Prot top hits (Blast detail)Scoree value
O60176 Uncharacterized RNA-binding protein C23E6.01c5826e-059
O13759 RNA-binding post-transcriptional regulator csx15092e-050
Q1RMJ7 tRNA selenocysteine 1-associated protein 13811e-035
Q9NX07 tRNA selenocysteine 1-associated protein 13811e-035
Q5R462 tRNA selenocysteine 1-associated protein 13774e-035

TrEMBL top hits (Blast detail)Scoree value
Q0WW84 At3g1913018562e-205
Q9LJL7 DNA/RNA binding protein-like17111e-188
Q8LFI9 Nuclear acid binding protein, putative17031e-187
B9HRX8 Predicted protein14037e-153
B9RY32 Nuclear acid binding protein, putative13983e-152

Arabidopsis top hits (Blast detail)Scoree value
AT3G19130.1 ATRBP47B (RNA-binding protein 47B); RNA binding18578e-208
AT1G49600.1 ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a); RNA binding15772e-175
AT5G19350.1 RNA-binding protein 45 (RBP45), putative8461e-090
AT5G19350.2 RNA-binding protein 45 (RBP45), putative8399e-090
AT1G47490.2 ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C); RNA binding7125e-075

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  33%
 
123  50%
 
61  17%

Unigene MembersMember information