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Information for unigene UN06411
| FASTA Sequence |
| Unigene ID: UN06411 | Length: 1578 |
SSR | | GGAGCCATTACCAGAGCTCAACGAGCTCTCTATTCTCTACACACTTCTTCTTAAAAGAGGAAAATCGGATCTTAACAATTTTTTTT
GCAAGATGCAGACGACCAACGGCTCAGATTCATCGTTAGCAACTCCCGGAGCGACGACGCCTCCGCCGCCTCAGCAGTGGCAACAA
CAACAACAGCAACATTGGATGGCGGCCATGCAGTATCCAGGCGCAGCGGCTATGATGATGATGCAGCAGCAACAGATGATGATGTA
TCCTCACCAATACGTTCCTTACAATTATCAGCAGCAGCAGCAGCATCCTCACTTCCAATACGCGTCGTATCAACAGCAACACAAGA
CACATGAGCGCGGATCTGGAGATGATGTGAAGACTCTATGGATTGGTGATCTTCTTTATTGGATGGACGAGACATATCTCCACAAC
TGCTTTTCTCACACCGGCGAGGTTTCTTCTGTGAAAGTGATTCGTAACAAGCTAACATGTCAATCAGAAGGGTATGGTTTTGTTGA
GTTTCTTTCGCGAGCTGCAGCTGAAGAGGTTCTTCAGAACTTTAACGGTTCAGTAATGCCAAACTCCGAGCAGCTCTTCCGTCTAA
ACTGGGCATCTTTTAGCACTGGTGAGAAGAGAGCAGTTGAGAATGGTCCAGAGCTATCTATATTCGTTGGAGATTTGTCTCCAGAT
GTGACCGACACTTTATTGCAAGAGCTCTTTGTTGAGAGATATCCATCTGTCAAGAGCGCTAAAGTTGTGATCGACTCCAACACTGG
CCGGTCTAAAGGTTACGGTTTTGTTAGGTTTGGTGATGAGAACGAGAGATCAAGGGCTTTGACGGAGATGAATGGAGCTTATTGTT
CCAACAGGCAGATGCGTGTAGGTGTTGCGACCCCTAAAAGAGCCGTTGCTAATCAGCAACAACAGCATCATCCTTCACAAGCTCTG
ATACTGGCTGGTGGACATGGAGCAAATGGTTACATGGCTCATGGCTCACAGTCTGATGGTTAATCAAACAACTCAACTATATTTGT
TGGTGGCATTGATCCTGATGTTACAGAAGAAGACCTCAGACAACCTTTCTCCCAGGTTGGAGAGGTTGTTTCGGTGAAGATCCCAG
TAGGCAAAGGATGTGGTTTCGTCCAATTAGCTAATAGGAAGAGTGCTGACGATGCCATCCAGAGTTTGAACGGGACAGTCATAGGC
AAGAACACTGTCAGACTTTCTTGGGGAAGAAGCCCGAACAAGCAGTGGAGAGGAGACTCGGGGCAGCAGTGGAATGGAGCACAACG
AGGACAAGGTTGCAACAATGGAGGATATGCTAACCACCACGACTCCAACACCTATCCTGCCGAGACTTGAAGAGAAGAGAATCAAA
AATTGATCATGGTCATATGGTGGTTAAAAAGCCTCTGTCATTGCTAAACTTGTAGTGGGAAAAAAAAAGAATTGTAGTGGGAAAAA
AAAAAGAATTTTTTTAGATGGATTTGATTTTGATAGACTTATGCTGTTGTTTGGAGATTCACAAATTTTGGTTACTACTGGTTTCT
CACAGACTAACATGAATGGTTGTGTTTGTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_188544 RNA-binding protein 47B [Arabidopsis thaliana] | 1856 | 3e-205 |
| XP_002885294 RNA-binding protein 47B [Arabidopsis lyrata subsp. lyrata] | 1840 | 2e-203 |
| BAB02953 DNA/RNA binding protein-like [Arabidopsis thaliana] | 1711 | 2e-188 |
| AAM67293 nuclear acid binding protein, putative [Arabidopsis thaliana] | 1703 | 2e-187 |
| NP_175383 RNA-binding protein 47A [Arabidopsis thaliana] | 1577 | 6e-173 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O60176 Uncharacterized RNA-binding protein C23E6.01c | 582 | 6e-059 |
| O13759 RNA-binding post-transcriptional regulator csx1 | 509 | 2e-050 |
| Q1RMJ7 tRNA selenocysteine 1-associated protein 1 | 381 | 1e-035 |
| Q9NX07 tRNA selenocysteine 1-associated protein 1 | 381 | 1e-035 |
| Q5R462 tRNA selenocysteine 1-associated protein 1 | 377 | 4e-035 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WW84 At3g19130 | 1856 | 2e-205 |
| Q9LJL7 DNA/RNA binding protein-like | 1711 | 1e-188 |
| Q8LFI9 Nuclear acid binding protein, putative | 1703 | 1e-187 |
| B9HRX8 Predicted protein | 1403 | 7e-153 |
| B9RY32 Nuclear acid binding protein, putative | 1398 | 3e-152 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G19130.1 ATRBP47B (RNA-binding protein 47B); RNA binding | 1857 | 8e-208 |
| AT1G49600.1 ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a); RNA binding | 1577 | 2e-175 |
| AT5G19350.1 RNA-binding protein 45 (RBP45), putative | 846 | 1e-090 |
| AT5G19350.2 RNA-binding protein 45 (RBP45), putative | 839 | 9e-090 |
| AT1G47490.2 ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C); RNA binding | 712 | 5e-075 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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