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Information for unigene UN06480

FASTA Sequence
Unigene ID: UN06480Length: 755 SSR 
GGAATTCGAAATCTCTCTCTCTTCTCTCTCTCCCGTGAGAGAACAGACGACAGATTTTGTTCTTTCCAGATCTCATCATCGTTTCC
GAAACTCACAAACCGAGAGAGAGAGAGAGAAGGAGAAGGAAGGAAGGAATCATGATAACGATCCCATACCTAACGGCGGTATCAAC
ATACTTCAGCTACGGCTTGCTCTTCGCCTTTGGGCAGCTACGGGATTACACGCGCCTCATCTTCGATTGGTGCTCCACGAACAACC
TCCACGGTTACGCCCCAATCTGCTTGGCTCACGAGGATTTCTACATCCGTCGTTTGTATCACCGCATTCAGGATTGTTTTAATCGA
CCGATATCAAGTGCGCCTGATTCTTGGGTTGATGTTATCGAGAGGTACTCTAACGACAACAACAAGACCCTCAAGCGAACAGCAAA
GAGCACAAGGTGCCTTAATCTGGGATCTTACAACTATCTTGGATTTGGTTCTTTCGATGAGTATTGCACCCCTCGTGTTATTGAGT
CTTTGAAGAAGTTCTCACCAAGTACATGTAGCTCTCGCGTTGACGCAGGAACCACATCTGTGCACGCAGAGCTTGAGGAATGTGTT
GCCAAGTATGTGGGAAAACCTGCTGCTATTGTCACTGGCATGGGCTTCGCTACTAACTCTGTCATCATTCCTGTCTTGATTGGAAA
GGGAGGGTTGATAATAAGCGATTCTTTGAACCATACTTCAATTGTAAACGGTGCTCGAGGCTCACGA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ABW97708 serine palmitoyltransferase long chain base subunit [Brassica rapa subsp. chinensis]10673e-114
NP_190447 serine palmitoyltransferase 1 [Arabidopsis thaliana]9931e-105
XP_002875925 hypothetical protein ARALYDRAFT_485232 [Arabidopsis lyrata subsp. lyrata]9875e-105
NP_197756 serine palmitoyltransferase [Arabidopsis thaliana]9624e-102
XP_002872066 LCB2 subunit protein [Arabidopsis lyrata subsp. lyrata]9624e-102

Swiss-Prot top hits (Blast detail)Scoree value
Q09925 Serine palmitoyltransferase 24371e-042
O54694 Serine palmitoyltransferase 24155e-040
P97363 Serine palmitoyltransferase 24147e-040
O15270 Serine palmitoyltransferase 24112e-039
Q54EX5 Serine palmitoyltransferase 24003e-038

TrEMBL top hits (Blast detail)Scoree value
B2XR72 Serine palmitoyltransferase long chain base subunit10672e-114
Q9M304 At3g487809937e-106
Q9LSZ9 Putative serine palmitoyltransferase9623e-102
Q9LRB4 Serine palmitoyltransferase9571e-101
B3Y000 Serine palmitoyltransferase9004e-095

Arabidopsis top hits (Blast detail)Scoree value
AT3G48780.1 SPT1 (SERINE PALMITOYLTRANSFERASE 1); serine C-palmitoyltransferase9935e-108
AT5G23670.1 LCB2; protein binding / serine C-palmitoyltransferase9622e-104
AT5G23670.2 LCB2; protein binding / serine C-palmitoyltransferase9622e-104
AT3G48790.1 serine C-palmitoyltransferase, putative2766e-025

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
61  33%
 
72  67%

Unigene MembersMember information