Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN06484

FASTA Sequence
Unigene ID: UN06484Length: 978  SNP
GAATAGAACTGATAAAAAATGTCGCCGCTTAAGGATATCCTAGCAAGGGAAGCCAAGAGGGAAGCCGAGAGGGAAGCCGAGAGGGA
AGCCGATCTTCTCAGTTCGCCTCCGGCGGACAGTCCCAAGAGGATGAGAATCAGTGGGCTGGAATGGGACGACCCTCGTACTCTTG
TATACAAATTCAAAACCCGTGACGTTGGGAGGGTTTTCGTAACGGGGTATGACACCAAGCTTCCACATGATGATGTCGATGGAGCG
TTGAGAAATCACTTCTCATCATGTGGAAGGATCACTGATATTCTTATCCGCCAAACAGATGAAGGACTCGTAAGCCGTGCAATCAT
TTTTTTCCTGGCAGAAGGCGCAGTAGACAAGGCGTTGCAACTTAGTGGAAGTGACGTTGGAGGATGGACGGCCATTGTTGAGCCCT
TTCCTTTTCTGAAATATGAAGGCCGTTCCATTACCGTAAATGTTACTGGGTATGACATCTCGCGTAGTGAGATTGATTTCAAGAGT
GCAATTCGTCAACATTTCTCTTCATGTGGAGAGATAAGCCACTTCAAAATTTCCAAGAAGGTTGCTTCAGCTAAATTTGATGTTGA
TGGAGAAGATGCGCAAGACAAGGTGATGGAACTTGATGAAAGCATCATGTGTGGAAGCAAAATACATGTTGATGTTATTTGTGGGG
CAATAACCACTGTTCACACCAGGCGTCATCTTTCCCGCAAGATGATCTAAGGTGCTATGGAGGAGCCTTTCTATCTATGCTGTTTT
CTTAACAAGTTTAGGAGCCTTCGACACTTTTTAACTAATGCACACGAAACATGGAAGATATGATTCCAGATAAGTATCTTCAAAAC
AAGAAGACCCAAGTAAATGAGTTTTTCTTTTCTAACGCTCAAGACTTGTAACTTAGATGCACATATTCAGGAAGAAACGGCTTAAT
ATTTAACAATATATAAAGTTACAGAACCTTCG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002871317 predicted protein [Arabidopsis lyrata subsp. lyrata]2932e-024
XP_002873183 predicted protein [Arabidopsis lyrata subsp. lyrata]2808e-023
NP_195968 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]2611e-020
NP_187528 RNA recognition motif-containing protein [Arabidopsis thaliana]2502e-019
AAD56336 hypothetical protein [Arabidopsis thaliana]2332e-017

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9LZD9 Putative uncharacterized protein F12E4_2502619e-021
Q9S755 MZB10.19 protein2332e-017
Q67YA0 Putative uncharacterized protein At5g035001669e-010
Q9LZD6 Putative uncharacterized protein F12E4_280 (Fragment)1605e-009
Q5BPG8 Putative uncharacterized protein1552e-008

Arabidopsis top hits (Blast detail)Scoree value
AT5G03480.1 nucleic acid binding / nucleotide binding2615e-023
AT3G09160.1 RNA recognition motif (RRM)-containing protein2339e-020
AT5G03495.1 nucleotide binding1665e-012
AT5G53700.1 INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT5G03480.1); Has 74 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).1551e-010
AT5G05430.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, leaf; EXPRESSED DURING: LP.04 four leaves visible; BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G09160.1); Has 23 Blast hits to 21 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1495e-010

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
64  44%
 
73  33%
 
102  22%

Unigene MembersMember information