RadishBase

| | | |

Information for unigene UN06533

FASTA Sequence

Unigene ID: UN06533	Length: 1044	SSR
GGGTTTTGTTTGTATCCTTCTTCCTCTCTCTCTCTCTCTATCTCTCTCCGCCGCATTACGTCTCTCTCTCTCTCAATCTCTCAGCT TAAGCGCAGAACCATGGCAGCGAAACAGGGAGCCGCAGCTACAACGTATTCACCCAAAATCATGGCGAGAACTAGGCCTCCTATCT TCAGAGGCTCTGACCTCGATTGGACCCGTCCTGATGGCCGTGGCTTCCACCAATGCCGACCTGCCTTACTTCAAACGGGTGCTGTG AGTGCTGCTTCTGGTTCTGCTTATGCTGAGTTTGGGAACACCAAAGTCATTGTTTCAGTATTTGGGCCAAGGGAGAGTAAGAAAGC AACGAGTTATAGTGATGTTGGTGGATTGAATTGCAATGTTAGCTACACTACTTTTTCTTCCCCTGCTCTTGGGAGTCAGGGGACTG ATCACAAAGAGTACTCATCAATGCTTCTCAAAGCGTTGGAAGGCGTAATCATGATGGAGACGTTCCCAAAGACAACTGTTGATGTT TTTGCGTTGGTGCTCGAATCTGGAGGCAGTGACCTCCCGGTTGTGATATCATGTGCTGGTCTTGCTCTAGCAGACGCCGGGATTAT GATGTACGACCTTATCACAGCTGTCTCAGTGTCTTGCATAGGGAAAAGCCTTATGATTGACCCGGTTACAGAAGAGGAAGGATGTG AAGATGGAAGCTTCATGATGACGTGCATGCCTTCTCGGAGTGAAATCACTCAGCTGACCATCACTGGTGAATGGACTACGCCTAAC ATTAACGAGGCAACGCAGCTTTGCGTGGATGCTTGTTCCAAACTTGGAGAAATCATGCGCGATTGTCTGAAACAGGCTGCCTCCGC TTCAGATGAATGAACATACAAGTCAAGAAACTATAGCTAGGATTGTACCTCAGCCATTGGTATGAAACCGGTTAAGCTGTTGGTTT AGGTAAAATTGAATTTATACTAAACCGGTGTGATGGAGTTTAAAACAGATGACTGTGTGCTAAGTCAAATTTGATGGAACTAGATC TTTAAAGAGCGT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_194479 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]	1168	1e-125
XP_002869560 hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp. lyrata]	1168	1e-125
XP_002328307 predicted protein [Populus trichocarpa]	959	2e-101
XP_002314284 predicted protein [Populus trichocarpa]	959	2e-101
XP_002285257 PREDICTED: hypothetical protein [Vitis vinifera]	958	2e-101

Swiss-Prot top hits (Blast detail)	Score	e value
O26779 Probable exosome complex exonuclease 1	321	7e-029
Q97BZ5 Probable exosome complex exonuclease 1	307	3e-027
A9A5C9 Probable exosome complex exonuclease 1	301	1e-026
A3MUP1 Probable exosome complex exonuclease 1	301	1e-026
A0RXU1 Probable exosome complex exonuclease 1	297	4e-026

TrEMBL top hits (Blast detail)	Score	e value
A2RVK7 At4g27490	1168	7e-126
B9HQC2 Predicted protein	959	1e-101
B9MZ65 Predicted protein	959	1e-101
A5BI33 Putative uncharacterized protein	958	1e-101
A9PJ38 Putative uncharacterized protein	955	3e-101

Arabidopsis top hits (Blast detail)	Score	e value
AT4G27490.1 3' exoribonuclease family domain 1-containing protein	1169	3e-128
AT3G61620.1 RRP41; 3'-5'-exoribonuclease/ RNA binding	265	2e-023
AT3G61620.2 RRP41; 3'-5'-exoribonuclease/ RNA binding	265	2e-023
AT3G46210.1 3' exoribonuclease family domain 1-containing protein	181	1e-013
AT3G46210.2 3' exoribonuclease family domain 1-containing protein	181	1e-013

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	1			33%


7	2			67%

Unigene Members	Member information