 |
Information for unigene UN06542
| FASTA Sequence |
| Unigene ID: UN06542 | Length: 1113 |
SSR | | TTTTTATTGTCTTTTTTCCTCTTCTCTTGTTTGAGAGTCAAGAGAGACTAAGGAAGAAGAAGAAGAAGAAGATCGGAGATATCGAA
GCTTTTGACTTTCTCTCACAACCCAAATCAAATCAATAGTGATAGATAAGCTATTGGATATGTCGAGCTTAGCTGCTTCGTTGGTC
ACTGGGGTTGGCCTGAGACCGGAAAGGTCGCTTCTTTACCAGCCCACTTCCTTTCCTTCCTCCAGAAGGAACACTCACGGTGCTGT
TAAGGCCTCAGCTCGGGTGGATAAGTTCTCAAAAACCGATATCATTGTTTCTCCATCGATTCTATCTGCCAACTTCTCCAAATTGG
GCGAGCAGGTAAAAGCTGTGGAGTTAGCAGGTTGTGATTGGATTCATGTTGATGTGATGGATGGTCGTTTTGTTCCCAACATTACT
ATTGGGCCGCTAGTGGTTGACGCTCTGCGCCCTGTTACAGATCTTCCGTTGGATGTTCATCTTATGATAGTGGAACCTGAGCAGAG
AGTGCCTGATTTCATCAAAGCAGGTGCAGATATAGTTAGTGTACATTGTGAGCAGTCCTCTACCATCCATTTACACCGTACAGTCA
ATCAAATTAAAAGCTTGGGAGCTAAAGCTGGAGTTGTCCTAAATCCTGGCACTCCATTGACTGCAATCGAATATGTATTAGACTGT
GTTGATCTGATCTTGATAATGTCTGTGAACCCTGGGTTTGGTGGGCAGAGCTTTATCGAAAGCCAAGTGAAGAAAATAGCAGACTT
GAGAAGAATGTGTGTGGAGCTGGGAGTAAACCCATGGATTGAAGTCGACGGTGGAGTCACTCCCAAAAATGCTTACAAGGTTATTG
AGGCTGGAGCAAATGCTTTAGTGGCTGGATCAGCTGTATTTGGAGCCAAAGACTACGCCGAAGCTATAAAAGGAATCAAAACTAGC
AAGAGACCAGAGACAGTGGCTGTGTGAACTTAAAAGCTCGGCACAAACCTGGGAACAAGGTTACTTGCAGCTTACAAAGACATGTA
AAAGAGGCAAGGAATGTGTACAAAGCACTCTTTTGTAATAACAATTTCAAAAAATGAAAACCCTCAAAAGTAAATTTATTT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002866432 hypothetical protein ARALYDRAFT_919384 [Arabidopsis lyrata subsp. lyrata] | 1264 | 8e-137 |
| NP_200949 D-ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana] | 1259 | 3e-136 |
| XP_002284772 PREDICTED: hypothetical protein [Vitis vinifera] | 1183 | 2e-127 |
| AAM19354 ribulose-5-phosphate-3-epimerase [Pisum sativum] | 1168 | 1e-125 |
| XP_002330128 predicted protein [Populus trichocarpa] | 1165 | 2e-125 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q43157 Ribulose-phosphate 3-epimerase, chloroplastic | 1156 | 1e-125 |
| Q43843 Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) | 1152 | 3e-125 |
| Q9ZTP5 Ribulose-phosphate 3-epimerase, chloroplastic | 1116 | 5e-121 |
| P74061 Ribulose-phosphate 3-epimerase | 807 | 3e-085 |
| O34557 Ribulose-phosphate 3-epimerase | 651 | 4e-067 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SAU2 Putative ribulose-5-phosphate-3-epimerase | 1259 | 2e-136 |
| Q8S4X2 Ribulose-5-phosphate-3-epimerase | 1168 | 7e-126 |
| B9N4C5 Predicted protein | 1165 | 2e-125 |
| C6TMB6 Putative uncharacterized protein | 1138 | 2e-122 |
| A9NP17 Putative uncharacterized protein | 1127 | 4e-121 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G61410.1 RPE; catalytic/ ribulose-phosphate 3-epimerase | 1260 | 9e-139 |
| AT5G61410.2 RPE; catalytic/ ribulose-phosphate 3-epimerase | 1260 | 9e-139 |
| AT3G01850.1 ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative | 397 | 1e-038 |
| AT3G01850.2 ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative | 397 | 1e-038 |
| AT1G63290.1 ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative | 388 | 1e-037 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
