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Information for unigene UN06553

FASTA Sequence
Unigene ID: UN06553Length: 1356 SSR 
AACCTTCAACACTTGGAACAGAACCAAAGAGTCAGAGTTCGCAGTCCGAATCTGATTGGGTCGTTGTCTCCCGCATCCAGGAGCCA
GAGAGCTCTCGGAATCGCAGTCCCGTTGGGAAGGAACGCAACGTTACTCAAATCATTGTGAACTCGGTTGACATGGATCGACTTAA
AGTGAAAAGCGCTGCTGTACTTTCTTCTCCCAGAACCGCTGCCAAGAATCTTTCACCATCAACTCAGACAAAGCCGGAGAAAAAGA
GCGTTTCAAACGCAGACGCTGTTCCAAATAGGAAGGTAATGCCAGCTTCTGGACCACCTTCATCATCAACTCAAGTAGTGCGGCCT
TCTTCAGATATTCAGTCGCAAACTGTTGGACTCAGAGCTGATACGCTAAAGATCTCTCCTCCTAAACAATCTGCAACAACAGCAAC
TATATCAAGGCCTTCTAGTGCTCCAATAATCCCAGCGATGCAACCCGCCCCTATCATCGCCTCCTCTTCGGTTCAATCAACATCAT
CATCATCCCTTCCTCGATCGGTTAGCTCAGCTGGTCGTCTAGGTCCCGACTCTTCGGTACACAACCAACAAACTTACATTCCTCAG
TCCTATAAACACGCCATAGTGGGTAACTCTCCTGGCTCAACATCTAGTTTCGTCCACCACCCAAGCTCTCATGGAGTTGTCCCAAC
CACACTGCCATCATCATCTTACTCGCAAACACCGACACTATCTCACCAGTCAAGCTTCCCGACATCATCTCATCATCAGTCAAGCT
TCCCTTTCAAACAAGATGCATTTATGTGGGCAGGAAGGAGTTCAAATTCTGCAAGCGTGGGCATGAACAACCCTTACACACCATCA
GCCGTGCCTAGCAACAGATCTGTGAACCACATTGATGTTGAGATTGCGCGACAACAACAACAACAACCACAAAGCTTGATGACCGA
CGAGTTCCCTCACCTCGATATCATCAACGACCTGCTGGAAGACGAAAGCTGCAGCAGCAGCATGGTGTTCAACGGAAACATGTACA
ATTCACAACCGCGAATTTTCAACAGCCAATACGCTTACCATGGTGGTGGTGGTGCTGATCTAGGCATCTCAGGCGAGTTTATGTCT
AGTGGGAGGTCCAGGAGTTTCGGAGAAGAAGGGTTCCATTACATGCCACGTGTCTCAGCAGCCGGACCATACGGCGGGGATGGATT
GATGCCGACGCAGTGGCAAATGGGGAACGTGGACCTGTCTTTACTAGCGATGAGAAACAGTAACTTGGAGATACAACAGCAACGTA
CCATCACACGCATTTTCGAGTTTTCGCATGGGATAAATGGATACAGTGAGTACAGACCTTCGTCTA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002892207 hypothetical protein ARALYDRAFT_470409 [Arabidopsis lyrata subsp. lyrata]13983e-152
NP_001077455 MATH domain-containing protein [Arabidopsis thaliana]11823e-127
NP_001077454 MATH domain-containing protein [Arabidopsis thaliana]11823e-127
NP_171926 MATH domain-containing protein [Arabidopsis thaliana]11823e-127
NP_001184907 MATH domain-containing protein [Arabidopsis thaliana]11823e-127

Swiss-Prot top hits (Blast detail)Scoree value
Q75JC9 Uncharacterized protein DDB_G02716701533e-009

TrEMBL top hits (Blast detail)Scoree value
A8MQL1 Uncharacterized protein At1g04300.311822e-127
A8MR11 Uncharacterized protein At1g04300.111822e-127
Q0WNI3 Putative uncharacterized protein At1g0430011742e-126
P93826 F19P19.2611402e-122
Q4FX62 Proteophosphoglycan 51822e-011

Arabidopsis top hits (Blast detail)Scoree value
AT1G04300.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G43560.2); Has 15585 Blast hits to 9972 proteins in 679 species: Archae - 16; Bacteria - 1260; Metazoa - 5683; Fungi - 2012; Plants - 671; Viruses - 109; Other Eukaryotes - 5834 (source: NCBI BLink).13522e-149
AT1G04300.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G43560.2); Has 15192 Blast hits to 9607 proteins in 677 species: Archae - 16; Bacteria - 1260; Metazoa - 5600; Fungi - 1932; Plants - 456; Viruses - 109; Other Eukaryotes - 5819 (source: NCBI BLink).13522e-149
AT1G04300.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G43560.2); Has 15485 Blast hits to 9800 proteins in 673 species: Archae - 16; Bacteria - 1225; Metazoa - 5601; Fungi - 1994; Plants - 616; Viruses - 101; Other Eukaryotes - 5932 (source: NCBI BLink).13522e-149
AT5G43560.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein7483e-079
AT5G43560.2 meprin and TRAF homology domain-containing protein / MATH domain-containing protein7483e-079

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
211  33%
 
191  33%
 
61  33%

Unigene MembersMember information