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Information for unigene UN06555

FASTA Sequence
Unigene ID: UN06555Length: 1165 SSR 
GGAAGGAAGCGAGTGACGACGTCTCTGTCTCTAGGTCTCTTGGCTTTTCCTCCGTCACAGTCACCGTAGAACATTGTGAATGGCGC
CTAGAGGAAGGAAAAAGAAGGCTGGAATGATGCGAGAGGATGCAGCACGAGATGCCATTAGAGCTTTTGGGTTTGCGGAGCGTCTT
ATCAATGTGTCTATCAAGGAATTGCTTGAGGTGTATGGTGCGGAGGGTTGGTTTCTGATCGAAGAGTGTAGTTACTTGGTGCTGTT
AAACAAATGCCTTGAGAAGTCAGCTGAACAAGGCCCAAATTTGCCTGAAGATAGGGTAGAAGAGAGGGCTGAGGAGGAGGAACAAA
ACGATGAGATGATGGCTGAGGCAGAGAAAGACCAAAACGATGAGATGGTGGCTGAGGAGGCAGAACCAGAACAAAACCATGAGATG
ATGGTTGAGGCAGAGCAAGAACACACGCCTCAGCAAGAAGAAGAAAAGGAGCAAGAAGAGCAGCTAAGAGACCATGTCGGTAGCAA
CTCAACGTCTCTGTTGGGGTGTGTTGCCGAGACAGGTACAAAGGCATGTCAGACTGAAGCTTTATCAACCACTAGCGAGACAGACA
TCTTGGACTCATCACCAGCAGCAGGAGAAGCATCAGTGATCGATTACACATCACCACCATCAGCGTTTCCACCAGCATGTTTTGCA
CAACATCCTTCTGCAGGTGCCAATCTTTCCGGACGGGGTGGATGGATAAGTGATTCGGCTGAGGATGAGGATCCAGATGATGGTGA
TGATGATGGTGATGAGATGATTCAGCTGACTCCAGAACCGCTGTGTGAAGAGCTTGAAGAGCTGATCAAGGAGATACGTGGAGAGA
AGAAGAAGAAGAAGAGGACCAGGTGGGAAGACTAAGCTGAGCTCATGAGCTCCTGTAAGCAGCGTCAAAGTTAAGTAAGCTAAGAA
GTAGAGTGAAAGAGAGTAAGTAGTATTAGAACAAGTAAGGAGGAGTCGAGAGCAGCTCCTGTAAGTATCGCTTAAGTTAAGTAAGC
TAAGAAGTAGAGTGAGAGACTAATAAGTAGTATTGGTTTAAAACTTGATATGGTGATGTATATTTTGTTATTTAAATCAGTTGTAT
AATCATTACTCTGTGCACAAACTTAATCTAAGTAAAATAACCAGTTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_973643 Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana]2737e-022
NP_001078027 Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana]2737e-022
XP_002879838 hypothetical protein ARALYDRAFT_903269 [Arabidopsis lyrata subsp. lyrata]2631e-020
XP_002894018 predicted protein [Arabidopsis lyrata subsp. lyrata]2469e-019
XP_002526885 conserved hypothetical protein [Ricinus communis]1876e-012

Swiss-Prot top hits (Blast detail)Scoree value
Q9EPQ2 X-linked retinitis pigmentosa GTPase regulator-interacting protein 11362e-007
Q7M732 Retrotransposon-like protein 11301e-006
Q54F38 Histone H3.v11221e-005
Q8IZL8 Proline-, glutamic acid- and leucine-rich protein 11221e-005

TrEMBL top hits (Blast detail)Scoree value
A8MQW8 Uncharacterized protein At2g40020.32735e-022
Q3EBJ3 Putative uncharacterized protein At2g40020.22735e-022
B9SLL6 Putative uncharacterized protein1874e-012
O04205 Expressed protein1732e-010
Q8GW87 Putative uncharacterized protein At2g400201732e-010

Arabidopsis top hits (Blast detail)Scoree value
AT2G40020.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WIYLD domain (InterPro:IPR018848); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45248.5); Has 87 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 42; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).2733e-024
AT2G40020.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WIYLD domain (InterPro:IPR018848); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45248.5); Has 5871 Blast hits to 3101 proteins in 244 species: Archae - 15; Bacteria - 225; Metazoa - 2760; Fungi - 445; Plants - 149; Viruses - 184; Other Eukaryotes - 2093 (source: NCBI BLink).2733e-024
AT2G40020.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WIYLD domain (InterPro:IPR018848); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45248.5); Has 5859 Blast hits to 3090 proteins in 244 species: Archae - 15; Bacteria - 222; Metazoa - 2729; Fungi - 459; Plants - 148; Viruses - 184; Other Eukaryotes - 2102 (source: NCBI BLink).2178e-018
AT1G45248.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WIYLD domain (InterPro:IPR018848); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40020.3); Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1667e-012
AT1G45248.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WIYLD domain (InterPro:IPR018848); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40020.3).1667e-012

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
73  75%
 
61  25%

Unigene MembersMember information