RadishBase

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Information for unigene UN06578

FASTA Sequence

Unigene ID: UN06578	Length: 1064	SSR
GGGACGAGGAAAGGAGCTATCATGTTGAAGCAAATCAATGAGAAAGCCTCAAGTGTTCATGCTTATGTTGTGTTTGAGACAGAGCA ATCTGCTGAAGCTTCTCTGGCACTTAACATGTCTCTGATTGATGGGAATCATGTCCGTGTTGATAGAGCATGTCCCCCTCGTAAGA AGCTGAAAGGTGAAGGTCAGGATACTCTTTTGTATGATTCTAAGAGGACAGTCTTTATAGGCAATCTCCCTTTCGACGTGAAGGAT GAGGAGGTGTATCAATTGTTTACTGGTAAGAGCAATCTAGAGAACAATCTAGAAGCTGTTCGTGTTATTAGAGATCCTCACTTGAA CATTGGAAAAGGAATAGCTTACGTCTTGTTTAAAACAAAGGAAGCTGCAAATCTTGTAATCAAGAAAGGGTATTTGAGGCTTAGAG AGAGAGAGTTGCGTATCTCTCGAGCCAAGCCTGATGCAACACCATCAAAGAGGAAGACCAATCCTTCTGAAGCTTACTCTCCAGCT GGTAAAAGACAACACAAGGACAAAGTAGTCACACCAACTGCGACGGGGAAGGCTGACTCTTTCGTATCAAGGTGTAAAAGCTTCGA AATCTGGTGATGATGATAAGAAGAAGCCTTATCAGAAAAGCCCTGCGCAGTCAAAGATGAGACCTAGAAGTAGTAGCAGCAGTGAA GGCAACAAGGGTGGTGCTGATAGTAAGAGTGCTGTGAAGCAGCGAAGTCAGAAGCGGCCAGCGGTTGCTGCAAGGAAAGCGAAAGC GAATGCTAAAGTAGGCTCAAAAGAGAGTGGTGGTAAGAAATTTGCAGGGACTAAGCGTAAACAAGAAAGCAGAACTCCTGAAAGCT TCTTTAAGAAGAAGAAAGCAAAGCGGGTTTAGATGGGTTTTAGTTGGACTATAAATTGTGGTTGATGTGAACCTCTTTCGTCTCCT TTAGCTGTGATACTTGTTTTCTTTGTATCGTTTTATGACAATATGATATAAACTCAGTGTAATGTTGCAACAGTTCTTTTGATGAT TTGCTTAACAGATTTATCAAATACTGAATAAA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002865157 RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata]	852	4e-089
NP_199496 RNA recognition motif-containing protein [Arabidopsis thaliana]	830	2e-086
AAM63703 unknown [Arabidopsis thaliana]	830	2e-086
NP_001078722 RNA recognition motif-containing protein [Arabidopsis thaliana]	830	2e-086
XP_002326533 predicted protein [Populus trichocarpa]	607	1e-060

Swiss-Prot top hits (Blast detail)	Score	e value
Q6BTS9 Nucleolar protein 12	181	1e-012
Q5M9F1 RNA-binding protein 34	149	6e-009
P42696 RNA-binding protein 34	147	1e-008
Q8C5L7 RNA-binding protein 34	145	2e-008

TrEMBL top hits (Blast detail)	Score	e value
A8MQH7 AT5G46840 protein	830	1e-086
Q8LCE5 Putative uncharacterized protein	830	1e-086
Q9LUK6 At5g46840	830	1e-086
B9MU42 Predicted protein	607	8e-061
B9GZ95 Predicted protein	601	4e-060

Arabidopsis top hits (Blast detail)	Score	e value
AT5G46840.1 RNA recognition motif (RRM)-containing protein	830	6e-089
AT5G46840.2 RNA recognition motif (RRM)-containing protein	830	6e-089

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	2			40%


12	2			40%


6	1			20%

Unigene Members	Member information