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Information for unigene UN06585

FASTA Sequence
Unigene ID: UN06585Length: 1152 SSR 
GGTATAAACGCGCTCAGTAATTATCCATTGTTTTAAAATGTTTTCTTGTCCAATGTAATAGGTGACTAAAAAATTGGTAGACAGCA
TATATGATTGGACTTGGGTTGTGATATTTGGTTGAACACATGAAATATGCTACATAAATTAGTCAAATAAAAAAGTTTGATGCAGC
TGATTAGCAATATTAGCTGCGGTTCGTCTGTAAGGGATGCCAAAAGGAAGTAGACTTGTGAATCTCACCAATAATAAATACGATGC
TTTTTAATCGAGGAGGGGTTGTGAACAGGGGGGGCTAGAAACGTTTGACAGCGATCACAACCATGAAAGTCAGTAAAGCCATGGTA
TTCCTCTCTATGACTAGCCATCGTCACCTCAAGTTTCCTTCCTCCCATGTAACTTCCATTTAGTTCTAACGCCTTCTCATTGCCTT
TACCATTTCTCAGATCAATGAAAGCGAACCCCAAGGGAAGGCGGTTTCTACACTCAAAAGGAACATAAACCCTAGTGACCTCTCCA
CAAGAAGCGAAAAAGTTGGTCAATGCATTCTTGATTTCATTCCTAGGTCGCAGATTTTCAAATCCTTTAACGAAAATGGTTCGGTC
GTCGTTTCCCTTGGCTTCTTTACATCCGAAACAGCAAGAATCTTCCTCCTCCTCCTTGTCCTTTGGGGTTTCTTTCTCCTCTGGTA
GATCGGCTTTTGTCAATAGAATCTGTTGCAGCGTTTTCACAGCTTCAGACAGCTCTTTGATAGATTTATTCATTTCTTTGATTTCC
TGCAAAATCGATGAAGATTCATTAGCCGTCTTCTTCTTCTTCTTGTTGCGCTGGTGGCCAATGAAATGGACGTATCCTCTGTCCAA
GCTGTGGGAGAGCTCGAATTCTCTGTCAAAGAAGAGATGATCAAAGCTGATGTCTTGAGAGAGTGTTCCGAGGAGGAGTTTCTTGT
CATCGATGGTGGCATACAAGAGTGCAGATACTCCCTTTTCCGCTTTGCTTAGTGAAGCCTGAGAGATGTGGATGAGACAGTTATCA
CCAGGCTTCACTTTGAGAGTCTTGCCCGCCTTAACTTTAGCTCCCCAGAACTCCATTGTTGGAGCAGGAGAGAAGGAGAGATTTGG
GAGAAAAGGCAAGTTTTAGGGTTTCTGCCAACTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002867513 hypothetical protein ARALYDRAFT_913813 [Arabidopsis lyrata subsp. lyrata]3292e-028
NP_001185392 RNA recognition motif-containing protein [Arabidopsis thaliana]3005e-025
NP_177491 RNA recognition motif-containing protein [Arabidopsis thaliana]2971e-024
NP_001105402 histone deacetylase HDT1 [Zea mays]2333e-017
ACG25189 histone deacetylase 2b [Zea mays]2333e-017

Swiss-Prot top hits (Blast detail)Scoree value
O24591 Histone deacetylase HDT12331e-018
Q9M4U4 Histone deacetylase HDT32322e-018
Q6V9I6 Histone deacetylase HDT12204e-017
Q9M4U5 Histone deacetylase HDT22204e-017
Q56WH4 Histone deacetylase HDT22043e-015

TrEMBL top hits (Blast detail)Scoree value
Q9FX42 AT1G73490 protein2978e-025
A9P996 Putative uncharacterized protein2342e-017
B9HQL3 Histone deacetylase2342e-017
B6SK06 Histone deacetylase 2b2332e-017
B4FHA8 Putative uncharacterized protein2206e-016

Arabidopsis top hits (Blast detail)Scoree value
AT1G73490.1 RNA recognition motif (RRM)-containing protein2974e-027
AT5G22650.1 HD2B (HISTONE DEACETYLASE 2B); histone deacetylase2043e-016
AT5G22650.2 HD2B (HISTONE DEACETYLASE 2B); histone deacetylase2043e-016
AT3G44750.1 HDA3 (HISTONE DEACETYLASE 3); histone deacetylase/ nucleic acid binding / zinc ion binding1953e-015
AT3G18610.1 ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1); nucleic acid binding / nucleotide binding1783e-013

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
71  33%
 
102  67%

Unigene MembersMember information