 |
Information for unigene UN06616
| FASTA Sequence |
| Unigene ID: UN06616 | Length: 1152 |
SSR | | AATCGAAAGAGATATATTTGTTCTTAGGAATGAGCACATGTATGTCTTAGGGTCAAGTAGTTGCAGTCGTTACTAAGAACAATAAA
CAAACAAAAAGGAAAAAAAAAAATCACAAATTGATTGTTTATGATATCCATTAAACCAAGAAAGATAAGCTATTATCTCCCAAAGA
CTTGGAGATTGATTCGTTAGCTTTCTGGGATTCGGCTGCTCTTTCCCCTCGCTTCTTCTTCTCCCTCTCGACATACTCCTTGAGTA
ATTCCTTGGCTTGGACAAGCTTTGAAAGCAGGTTGCGATACACATCGAGGTCCCGATCCACGCTTTTCTTGTTGATATTTAGGGAT
GCACAAAGCTTGTCAAGGACGGTGGGATCAGTAGCACCTGCAAGCTCAAGCAAGCGAAACAAACCAACAGCGAAAAACCTGCTGTA
ACTGAAACCCTCCTTACTGCCAGCTCTTTCTGAAATGTCCTTAAAAATCGCTTCAACTTCTCCCTCCTTAGACGAGAAGTCAACTA
GTGAAGCAAAAGTCTGACTTCGCGCCCATTCCTCCATCTTCTGCGCATCAGTTCGGTATTGGTTAGGATCCTCATTCAAAGCTTGG
ACGTAGGCTTGAAAAATGGAATCACGATCCTGATCGCTGGGATATCCATCCATGAGCTGATCGTAGACGGTGACGAAGCCGAGGGC
GAAAACAGGGTCGTAACGGTAAGTCTTTTTATACCTCATCAAATGCTGCTGTACGATGAGCTCCTGCAAGACGGTGTTGTAGATGC
TGGGGATTGGTCGCTTGTACGCTTTTAGGAAGTTTGACTTTGTCTCCGATACAGGTGGCACATCGGTAACACTAGACATGCAGTGG
ATAATTAATTTCGAAGAGGAAGTGGAAGCCCTAGAAGAAGTCAAAGAGTGGCGAGAAATCCTCCTAGAGATGGCGGAGACGGAGGC
GAGAGGAAGAGAAGGCGTGGTTGAATTGGAGATCTTTGCGGATTGGCCCAGCGCCGGAAAGGAGAGAGAAGCGATTGCAGCTGCCA
TTTCGAATCTGAAGAAGATTGGAAGAAAGAGAGAGATAGAGAGAGAGAGGAGAGTTTTGTTATTGGGATTTGGGGAGAGGAGAGGA
GGATGGCTTGGCCATGGGAAAGAGGGAGGATCCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABV89647 chloroplast light-regulated protein [Brassica rapa] | 1264 | 8e-137 |
| XP_002884230 hypothetical protein ARALYDRAFT_900469 [Arabidopsis lyrata subsp. lyrata] | 1193 | 1e-128 |
| NP_565491 protein THYLAKOID FORMATION 1 [Arabidopsis thaliana] | 1176 | 1e-126 |
| AAM64943 unknown [Arabidopsis thaliana] | 1163 | 4e-125 |
| XP_002275686 PREDICTED: hypothetical protein [Vitis vinifera] | 1036 | 2e-110 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SKT0 Protein THYLAKOID FORMATION 1, chloroplastic | 1180 | 2e-128 |
| Q7XAB8 Protein THYLAKOID FORMATION1, chloroplastic | 999 | 2e-107 |
| Q84PB7 Protein THYLAKOID FORMATION1, chloroplastic | 926 | 6e-099 |
| B8HQ62 Protein thf1 | 350 | 3e-032 |
| Q31MY4 Protein thf1 | 340 | 5e-031 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A8IXS3 Chloroplast light-regulated protein | 1264 | 6e-137 |
| A7XZB8 Chloroplast-localized protein | 1027 | 2e-109 |
| B9I6H1 Predicted protein | 1002 | 1e-106 |
| C6T9W9 Putative uncharacterized protein | 998 | 4e-106 |
| B9RW80 Protein THYLAKOID FORMATION1, chloroplast, putative | 987 | 7e-105 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
