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Information for unigene UN06640
| FASTA Sequence |
| Unigene ID: UN06640 | Length: 1788 |
SSR | | GGAGGAAGGTGAGAGGAGGGATGATGATGATGATGAGCTTAGTGGTGGTGGTGGTGAGTCTAGTGATGTTGATGCTGATAAGGATT
TGAAGCGTTTGAAATCTAATTTCGAGGTTCTTTGTGATGAGGATAAGATTCTTGTGTTTTACAAGAAGCTGTTGATTGAGTGGAAA
CAGGAGCTTGATGCTGTGGAGAACACAGAGAGGAGAACTGCTAAAGGGAAGAAGAATGTTGCCACTTTTAAGCAGTGTGCTAGGTA
TCTTACTCCTCTCTTCAACTTATGCAGGAAGAAGGTATAAATCACAATCCTTTTGCTTGCTGATAAGATAACTCGTAGACTTGTTG
TGTCAACTTATATAAGGTAGCAACTTGTTATGTAACTTATACAGAACTATGTTGGTTAAACTTTGTTTGGGTACGAACATAGATGC
ACAACGACTAGGTTTCATTAGCTTGAGTACTTTTGGTTTCAGATATGGTGACAAGAATAGACATTTCAGTAGTTATATTGCTACAT
AAACACTTAAGACGTAGATAAGTAGTTTTATATTCACCTTGAGCTTGGTACTGGGGTCTGTGTTATCTCCCATTTAGTAACTTTTT
GGTGCAAAGCAAGTTTCTCCCTTTCTGTCTTATTGTCGTTAATATATTCTTTACATTGAAGTTTTATCAGCTCTCTTGGACTTGTA
CGTTTACAAATTGCAGGGTTTGCCATCTGATATTCGTCAAGCTTTAATGGTGATGGTTAAGCACTGCATAAAGCGAGACTACCTCG
CTGCGATGGATCACTACATCAAACTAGCCATAGGGAACGCACCGTGGCCCATCGGTGTGACTATGGTTGGTATCCACGAGCGTTCC
GCGCGAGAGAAGATTCACACCAACAGTGTTGCTCACATCATGAACGACGAGACCACTCGCAAGTATCTTCAGTCGGTTAAAAGATT
GATGACGTTCTGCCAGAGACGTTATCCAACTATGCCTTCTAAAGCTGTTGAGTTCAATAGCTTAGCCAACGGAAGTGATTTACAGT
CGTTGCTCGCTGAAGAGAGGTACTTTGGTGGTGATTGTGGACAAGTCTCGGAAGAAAGACTACGTCTCATGCCTTCTCAGAAGGAC
AACTAATGTTTTGCATCTTTGCAGTGTTTGTAATGTCTTGCACCTTTTCTAAGAGAATTATGAAAGCTCGACTATTGTTGTAATCA
TATAGAGGATCTTCTTTTAGTATTGAAAACAAAAAAGGTTCACATTAGCCTCTGAATTGCAACTGCTGTAAACTACAACTGTATCA
TAATGTAACAGTACAGTGATGAAAGTGGCGAAAACACGATGATAAGCCTAAAACAAAAGTTCAGCAAATTGAAAATCAGGTGGTTT
TCTTGTCATTTCTGCTTCTTTTCCTGAACTCTCTCTTCTCTTCAGAGTATTGCTTCTTCATCAAAAGGCTGGACATTGCTGCTCTC
ACAGCTTCTGCTGCAGCAATCATCACACTCTCTTCTACTGAAATTTTACCTTGCAATTTCTCCAACAGTTTTGTCCCTCCAGGAAT
CTGATCATCTTCAAGGATGCAGATTTTTCAGACTCAATGCACGAGATGACACGAACCCTTGAATAACCAGGCTGGCTCGAACCATT
TGAGGCTCCAGATACCATCCATAGTGTAGATGTGCTTAAAGAGATACTTGTGGGGATGAAACTTTCTCCAGGGATTTTAATCACCT
TTGTGATAGAGAGAGTATGGGCTGACAGATCACAGCTTAGCAATAATATTCCTTGGAAACTTTGAATC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_563676 splicing factor Prp18-like protein [Arabidopsis thaliana] | 670 | 1e-067 |
| XP_002892149 splicing factor Prp18 family protein [Arabidopsis lyrata subsp. lyrata] | 665 | 4e-067 |
| XP_002307588 predicted protein [Populus trichocarpa] | 595 | 6e-059 |
| XP_002278267 PREDICTED: hypothetical protein [Vitis vinifera] | 585 | 8e-058 |
| CBI28698 unnamed protein product [Vitis vinifera] | 585 | 8e-058 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q2HJ41 Pre-mRNA-splicing factor 18 | 344 | 3e-031 |
| Q6GMH0 Pre-mRNA-splicing factor 18 | 344 | 3e-031 |
| Q99633 Pre-mRNA-splicing factor 18 | 344 | 3e-031 |
| Q8BM39 Pre-mRNA-splicing factor 18 | 344 | 3e-031 |
| Q5RE03 Pre-mRNA-splicing factor 18 | 344 | 3e-031 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SA55 F10O3.3 protein | 670 | 8e-068 |
| B9H894 Predicted protein | 595 | 4e-059 |
| B9S407 Potassium channel regulatory factor, putative | 582 | 1e-057 |
| C5XCA3 Putative uncharacterized protein Sb02g036950 | 558 | 7e-055 |
| B6T2W8 Prp18 domain containing protein | 554 | 2e-054 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G03140.1 splicing factor Prp18 family protein | 671 | 3e-070 |
| AT1G54590.1 splicing factor Prp18 family protein | 523 | 5e-053 |
| AT1G03110.1 transducin family protein / WD-40 repeat family protein | 295 | 1e-026 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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